Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.44□□□□□ -1.54
LMX1BO60663 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.44□□□□□ -1.54
LMX1BO60663 AC078880.4-201ENST00000617627 1749 ntBASIC5.44□□□□□ -1.54
LMX1BO60663 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC5.44□□□□□ -1.54
LMX1BO60663 AC003992.1-201ENST00000635364 557 ntBASIC5.44□□□□□ -1.54
LMX1BO60663 AL357140.4-201ENST00000636827 412 ntBASIC5.44□□□□□ -1.54
LMX1BO60663 RFC1-217ENST00000639695 867 ntTSL 5 BASIC5.44□□□□□ -1.54
LMX1BO60663 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
LMX1BO60663 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
LMX1BO60663 AP000547.3-204ENST00000588548 2523 ntBASIC5.44□□□□□ -1.54
LMX1BO60663 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
LMX1BO60663 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
LMX1BO60663 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
LMX1BO60663 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
LMX1BO60663 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
LMX1BO60663 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
LMX1BO60663 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
LMX1BO60663 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC022164.1-201ENST00000568767 2673 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LMX1BO60663 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.43□□□□□ -1.54
LMX1BO60663 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LMX1BO60663 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LMX1BO60663 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LMX1BO60663 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
LMX1BO60663 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
LMX1BO60663 RN7SKP275-201ENST00000364626 301 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 AC004386.1-201ENST00000393214 761 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 RPS21P8-201ENST00000413365 247 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LMX1BO60663 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC5.43□□□□□ -1.54
LMX1BO60663 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 DNAJA1P5-201ENST00000440278 943 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 XKRYP6-201ENST00000440468 1116 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 XKRYP3-201ENST00000442113 1116 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.43□□□□□ -1.54
LMX1BO60663 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC5.43□□□□□ -1.54
LMX1BO60663 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 OR52I1-201ENST00000450052 1050 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.43□□□□□ -1.54
LMX1BO60663 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.43□□□□□ -1.54
LMX1BO60663 RN7SL714P-201ENST00000487050 298 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 AP002453.1-201ENST00000492327 668 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC008945.1-201ENST00000505144 499 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.43□□□□□ -1.54
LMX1BO60663 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.43□□□□□ -1.54
LMX1BO60663 RNA5SP116-201ENST00000516132 98 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 AC025857.1-201ENST00000525252 377 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC092865.1-201ENST00000544395 1023 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC007448.1-201ENST00000582714 234 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 NPIPB1P-202ENST00000588786 828 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 AC027334.1-201ENST00000603257 310 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 AC026124.2-201ENST00000621847 656 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 AC004808.2-201ENST00000627965 773 ntBASIC5.43□□□□□ -1.54
LMX1BO60663 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LMX1BO60663 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LMX1BO60663 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
LMX1BO60663 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
LMX1BO60663 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.42□□□□□ -1.54
LMX1BO60663 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.42□□□□□ -1.54
LMX1BO60663 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.42□□□□□ -1.54
LMX1BO60663 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
LMX1BO60663 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.42□□□□□ -1.54
LMX1BO60663 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 Y_RNA.110-201ENST00000363220 99 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 SNORA11B-201ENST00000408175 129 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.42□□□□□ -1.54
LMX1BO60663 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC5.42□□□□□ -1.54
LMX1BO60663 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.42□□□□□ -1.54
LMX1BO60663 RPL12P16-201ENST00000431098 498 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LMX1BO60663 BX679664.2-201ENST00000439282 283 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.42□□□□□ -1.54
LMX1BO60663 OR2L9P-201ENST00000444456 913 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.42□□□□□ -1.54
LMX1BO60663 AC104109.1-201ENST00000498563 436 ntBASIC5.42□□□□□ -1.54
LMX1BO60663 RNA5SP418-201ENST00000515951 117 ntBASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 148.4 ms