Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 DPPA2P4-201ENST00000563717 878 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 MIR6820-201ENST00000611508 62 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 Mico1.1-201ENST00000611698 204 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC096861.1-201ENST00000616652 240 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC008115.4-201ENST00000619780 775 ntBASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 AC104066.2-201ENST00000564513 1741 ntTSL 3 BASIC11.4□□□□□ -0.58
SHROOM4Q9ULL8 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC11.4□□□□□ -0.59
SHROOM4Q9ULL8 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
SHROOM4Q9ULL8 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC11.39□□□□□ -0.59
SHROOM4Q9ULL8 AC093166.4-201ENST00000457867 318 ntBASIC11.39□□□□□ -0.59
SHROOM4Q9ULL8 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC11.39□□□□□ -0.59
SHROOM4Q9ULL8 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC11.39□□□□□ -0.59
SHROOM4Q9ULL8 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC11.39□□□□□ -0.59
SHROOM4Q9ULL8 uc_338.26-201ENST00000612659 160 ntBASIC11.39□□□□□ -0.59
SHROOM4Q9ULL8 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
SHROOM4Q9ULL8 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
SHROOM4Q9ULL8 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC11.39□□□□□ -0.59
SHROOM4Q9ULL8 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 PARN-201ENST00000341484 2100 ntTSL 2 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 AC026254.2-201ENST00000475295 371 ntBASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 RNA5SP394-201ENST00000364216 119 ntBASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 AL137246.1-201ENST00000607072 977 ntBASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
SHROOM4Q9ULL8 PDZK1P1-202ENST00000425209 1350 ntBASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 AL161901.1-201ENST00000624954 3425 ntBASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 AC103591.2-201ENST00000265259 766 ntBASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 AL451136.1-201ENST00000435399 325 ntBASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 AC091685.2-201ENST00000454924 864 ntBASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 RN7SL583P-201ENST00000475692 287 ntBASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 RN7SL184P-201ENST00000488308 297 ntBASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 CASP5-209ENST00000531367 879 ntTSL 5 BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 AL021368.3-201ENST00000607119 578 ntBASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 EEF1A1P14-201ENST00000421195 1376 ntBASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC11.37□□□□□ -0.59
SHROOM4Q9ULL8 Z82209.2-201ENST00000623410 2012 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 AC096921.2-201ENST00000561507 1916 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 MTHFD2P5-201ENST00000320415 844 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 RN7SKP59-201ENST00000410520 314 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 RPL23AP27-201ENST00000415161 451 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 RN7SL222P-201ENST00000476452 299 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 NRBF2P4-201ENST00000520874 850 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 HMGN2P6-201ENST00000551091 273 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 IGBP1P1-201ENST00000554337 1009 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 AC006530.1-201ENST00000555980 571 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 AL049539.1-201ENST00000611964 459 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 RPSAP73-201ENST00000614820 330 ntBASIC11.36□□□□□ -0.59
SHROOM4Q9ULL8 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms