Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC008627.1-201ENST00000517511 1704 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 MTHFD2P5-201ENST00000320415 844 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 RNU1-134P-201ENST00000362935 165 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 SNORA51.1-201ENST00000363243 140 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AL050335.1-201ENST00000396909 869 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 CDY17P-201ENST00000414121 1282 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 CHEK2P5-201ENST00000423877 246 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 OR3D1P-201ENST00000438288 955 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 ACA64.1-201ENST00000459171 127 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 OR2A1-AS1-202ENST00000467944 422 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 RN7SL174P-201ENST00000475578 289 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AC012123.2-201ENST00000485809 248 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 PPP1R11P1-201ENST00000486095 376 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 PSMA2P2-201ENST00000504319 686 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AC090958.1-201ENST00000511122 351 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 SNORD46.2-201ENST00000516021 102 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 MIR7159-201ENST00000620587 66 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 AC010809.3-201ENST00000621310 641 ntBASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
TM9SF3Q9HD45 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 RNA5SP273-201ENST00000362484 113 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 RPL31P15-201ENST00000449770 338 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 CFL1P4-201ENST00000451536 498 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 NXT1P1-201ENST00000458481 316 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC007998.1-201ENST00000474156 672 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC010343.2-201ENST00000510162 224 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 IGKV2-19-201ENST00000518132 283 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 IGHV1-14-201ENST00000523391 241 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 RPA2P1-201ENST00000556557 721 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC007448.1-201ENST00000582714 234 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AL008723.3-201ENST00000608926 449 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AC022106.1-201ENST00000612834 766 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AL132640.3-201ENST00000630473 177 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 HSPD1P8-201ENST00000400121 1658 ntBASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
TM9SF3Q9HD45 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms