Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 USP46-202ENST00000451218 4622 ntTSL 5 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 RNA5SP232-201ENST00000364144 119 ntBASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 GAPDHP59-201ENST00000435908 267 ntBASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 OR9N1P-201ENST00000491296 333 ntBASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 HSD3BP3-201ENST00000514706 994 ntBASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 AP003080.1-202ENST00000526526 915 ntBASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 AC002310.3-201ENST00000569728 723 ntBASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 DYNLL1P1-201ENST00000595442 269 ntBASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 AL592494.3-201ENST00000609485 464 ntBASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 TCL6_3.1-201ENST00000619064 137 ntBASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
CHMP4AQ9BY43 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 OSBPL9P1-201ENST00000604744 1469 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 RNU1-65P-201ENST00000363919 148 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 MIR1275-201ENST00000408770 80 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC097721.1-201ENST00000427150 1253 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 PPIAP10-201ENST00000438675 458 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC010240.2-201ENST00000445363 1205 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 KRTAP2-5P-201ENST00000446109 396 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC009963.3-201ENST00000458090 486 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 MAST4-IT1-201ENST00000514241 658 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 RNA5SP473-201ENST00000516402 125 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 RNA5SP441-201ENST00000516809 88 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 KCTD9P4-201ENST00000526766 1166 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC084121.1-201ENST00000533882 835 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC005000.1-201ENST00000536192 288 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 MIR4675-201ENST00000577898 77 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 RN7SL475P-201ENST00000583379 298 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 PARP4P2-201ENST00000446672 3326 ntBASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
CHMP4AQ9BY43 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC8.09□□□□□ -1.12
CHMP4AQ9BY43 EEF1A1P9-201ENST00000514975 1383 ntBASIC8.09□□□□□ -1.12
CHMP4AQ9BY43 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.12
CHMP4AQ9BY43 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AC016745.2-201ENST00000608834 3443 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 HSPD1P9-201ENST00000420325 1636 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 RNU6-249P-201ENST00000363016 102 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 MIR621-201ENST00000384919 96 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 RN7SKP121-201ENST00000410842 305 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 UBE2V1P14-201ENST00000415815 558 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 REG1CP-206ENST00000447469 496 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 HIGD1AP16-201ENST00000450986 258 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 HSPE1P22-201ENST00000456856 327 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 SEPT7P6-201ENST00000469999 1143 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 SUMO2P19-201ENST00000518920 295 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 OR1E3-201ENST00000575608 948 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 MIR4301-201ENST00000577203 66 ntBASIC8.08□□□□□ -1.12
CHMP4AQ9BY43 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC8.08□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms