Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 RANP7-201ENST00000418085 644 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 NME1P1-201ENST00000420914 382 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 RPL7AP51-201ENST00000422016 760 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC090589.1-201ENST00000473109 362 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 OR5D2P-201ENST00000524390 911 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 HNRNPCP1-201ENST00000556181 766 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC012368.3-201ENST00000604190 219 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AC004890.3-201ENST00000605566 1095 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 AL021368.1-201ENST00000607490 540 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AL137067.2-201ENST00000621202 131 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 MIR6823-201ENST00000622118 61 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 DRG1-207ENST00000629688 309 ntTSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AL078595.2-201ENST00000605309 1780 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC138907.8-201ENST00000623981 2256 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC140134.1-201ENST00000511830 3544 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 RNA5SP485-201ENST00000365053 119 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 RPL23AP17-201ENST00000401064 499 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 RN7SKP129-201ENST00000410288 299 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 GPN3P1-201ENST00000423883 535 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 MTND3P4-201ENST00000453537 303 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 RPL7L1P3-201ENST00000455249 689 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 SNRPCP3-201ENST00000474888 476 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 RN7SL369P-201ENST00000477138 299 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 OR52A4P-202ENST00000481634 799 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC114728.1-201ENST00000488289 483 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 GM2AP2-201ENST00000491764 562 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 AGGF1P3-201ENST00000493675 1213 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC112184.1-201ENST00000505179 312 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 Y_RNA.710-201ENST00000516975 110 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC116917.1-201ENST00000520558 305 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AP003033.2-201ENST00000528901 805 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC067805.1-201ENST00000559344 470 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 OOSP1P2-201ENST00000579644 351 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 SYPL1P2-201ENST00000582878 727 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms