Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SETP3-201ENST00000581726 813 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC116651.1-201ENST00000609724 556 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AP000542.3-201ENST00000623391 6114 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 PALLD-201ENST00000261509 5809 ntAPPRIS P3 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC093155.2-201ENST00000420734 937 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC068522.1-201ENST00000482895 345 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC026774.2-201ENST00000513990 1098 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AL136131.3-201ENST00000607600 188 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 Z83820.1-201ENST00000456978 1499 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 MIR640-201ENST00000385086 96 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 CYCSP52-201ENST00000422857 310 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC016908.1-201ENST00000442571 1219 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC027026.1-201ENST00000532323 742 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AL953862.2-201ENST00000603089 820 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 RPL12P48-201ENST00000605620 304 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 MIR1178-201ENST00000408396 91 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 LSM5-203ENST00000409782 649 ntTSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 RN7SKP273-201ENST00000411392 314 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 BX284632.2-201ENST00000421091 399 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 IGKV1OR10-1-201ENST00000442306 329 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 GAPDHP23-201ENST00000444823 993 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 IGKV1OR22-5-201ENST00000458718 354 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC110775.1-201ENST00000513721 462 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AP000648.1-201ENST00000529682 397 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AL031601.1-201ENST00000605702 394 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 CU639417.4-201ENST00000623928 207 ntBASIC1.86□□□□□ -2.11
SYNE1Q8NF91 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
SYNE1Q8NF91 AC013268.3-201ENST00000262716 2324 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC064862.4-201ENST00000442180 334 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 NDUFAF4P2-201ENST00000445374 520 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 OR9K1P-201ENST00000326513 941 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms