Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MRPS21P7-201ENST00000566937 238 ntBASIC7.08□□□□□ -1.28
BRCA1P38398 MIR4311-201ENST00000580794 100 ntBASIC7.08□□□□□ -1.28
BRCA1P38398 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC7.08□□□□□ -1.28
BRCA1P38398 AC009163.6-201ENST00000612367 342 ntBASIC7.08□□□□□ -1.28
BRCA1P38398 AC132068.1-201ENST00000623805 459 ntBASIC7.08□□□□□ -1.28
BRCA1P38398 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
BRCA1P38398 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC7.08□□□□□ -1.28
BRCA1P38398 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
BRCA1P38398 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
BRCA1P38398 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
BRCA1P38398 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
BRCA1P38398 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
BRCA1P38398 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
BRCA1P38398 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
BRCA1P38398 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
BRCA1P38398 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
BRCA1P38398 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
BRCA1P38398 SPHKAP-202ENST00000392056 6917 ntAPPRIS ALT2 TSL 1 (best) BASIC7.07□□□□□ -1.28
BRCA1P38398 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
BRCA1P38398 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
BRCA1P38398 AL355916.1-202ENST00000508827 5103 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
BRCA1P38398 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
BRCA1P38398 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
BRCA1P38398 MIR130A-201ENST00000385274 89 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 U3.36-201ENST00000408418 213 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 AC016397.1-201ENST00000412463 242 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC7.07□□□□□ -1.28
BRCA1P38398 AL360081.1-201ENST00000428299 555 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 AC011753.3-201ENST00000443436 406 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 AC112187.1-201ENST00000455837 479 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 OR13C1P-201ENST00000457612 963 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 AC015864.1-201ENST00000496512 544 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 OR5AZ1P-201ENST00000527448 943 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC7.07□□□□□ -1.28
BRCA1P38398 MIR4260-201ENST00000583107 67 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC7.07□□□□□ -1.28
BRCA1P38398 AC105105.5-201ENST00000622635 1294 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 MIR7641-1-201ENST00000627518 61 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC7.07□□□□□ -1.28
BRCA1P38398 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
BRCA1P38398 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
BRCA1P38398 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
BRCA1P38398 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC7.07□□□□□ -1.28
BRCA1P38398 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC7.07□□□□□ -1.28
BRCA1P38398 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC7.07□□□□□ -1.28
BRCA1P38398 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.07□□□□□ -1.28
BRCA1P38398 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
BRCA1P38398 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
BRCA1P38398 NCOA4P3-201ENST00000513203 1877 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
BRCA1P38398 DUTP5-201ENST00000406790 469 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 MYL6P5-201ENST00000412707 459 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC7.07□□□□□ -1.28
BRCA1P38398 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC7.07□□□□□ -1.28
BRCA1P38398 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC7.07□□□□□ -1.28
BRCA1P38398 AC103563.5-201ENST00000455643 364 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 GYG1P1-201ENST00000460864 698 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 AC092324.1-201ENST00000468671 324 ntBASIC7.07□□□□□ -1.28
BRCA1P38398 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC7.07□□□□□ -1.28
BRCA1P38398 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC7.07□□□□□ -1.28
BRCA1P38398 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC7.07□□□□□ -1.28
BRCA1P38398 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC7.07□□□□□ -1.28
BRCA1P38398 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC7.07□□□□□ -1.28
BRCA1P38398 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC7.07□□□□□ -1.28
BRCA1P38398 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC7.06□□□□□ -1.28
BRCA1P38398 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC7.06□□□□□ -1.28
BRCA1P38398 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC7.06□□□□□ -1.28
BRCA1P38398 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
BRCA1P38398 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 AL031595.3-201ENST00000624919 14262 ntBASIC7.06□□□□□ -1.28
BRCA1P38398 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 NENFP1-201ENST00000419476 466 ntBASIC7.06□□□□□ -1.28
BRCA1P38398 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC7.06□□□□□ -1.28
BRCA1P38398 CEACAMP10-202ENST00000495431 496 ntBASIC7.06□□□□□ -1.28
BRCA1P38398 AC090638.1-201ENST00000498296 909 ntBASIC7.06□□□□□ -1.28
BRCA1P38398 AC105233.1-201ENST00000498840 781 ntBASIC7.06□□□□□ -1.28
BRCA1P38398 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC7.06□□□□□ -1.28
BRCA1P38398 MIR7703-201ENST00000620784 77 ntBASIC7.06□□□□□ -1.28
BRCA1P38398 MAPK10-365ENST00000641902 3825 ntBASIC7.06□□□□□ -1.28
BRCA1P38398 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
BRCA1P38398 NLGN4Y-203ENST00000382868 5338 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
BRCA1P38398 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC7.06□□□□□ -1.28
BRCA1P38398 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
BRCA1P38398 AL731556.1-201ENST00000394628 3711 ntBASIC7.06□□□□□ -1.28
BRCA1P38398 CTNNA1P1-201ENST00000515849 2728 ntBASIC7.06□□□□□ -1.28
BRCA1P38398 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC7.06□□□□□ -1.28
BRCA1P38398 MAPK10-323ENST00000641493 3207 ntBASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms