Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC7.82□□□□□ -1.16
HOXC9P31274 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
HOXC9P31274 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.82□□□□□ -1.16
HOXC9P31274 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC7.81□□□□□ -1.16
HOXC9P31274 YES1P1-201ENST00000418510 1628 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 AL353763.1-201ENST00000624467 1628 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC7.81□□□□□ -1.16
HOXC9P31274 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
HOXC9P31274 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC7.81□□□□□ -1.16
HOXC9P31274 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC7.81□□□□□ -1.16
HOXC9P31274 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC7.81□□□□□ -1.16
HOXC9P31274 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
HOXC9P31274 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
HOXC9P31274 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
HOXC9P31274 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC7.81□□□□□ -1.16
HOXC9P31274 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC7.81□□□□□ -1.16
HOXC9P31274 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
HOXC9P31274 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC7.81□□□□□ -1.16
HOXC9P31274 SEPT7P2-202ENST00000398921 823 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 RN7SKP151-201ENST00000410230 316 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC7.81□□□□□ -1.16
HOXC9P31274 TNPO1P1-201ENST00000423641 1138 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC7.81□□□□□ -1.16
HOXC9P31274 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
HOXC9P31274 COPS8P2-201ENST00000473228 627 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 RPL38P3-201ENST00000484463 213 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.81□□□□□ -1.16
HOXC9P31274 RNA5SP34-201ENST00000516887 130 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC7.81□□□□□ -1.16
HOXC9P31274 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC7.81□□□□□ -1.16
HOXC9P31274 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC7.81□□□□□ -1.16
HOXC9P31274 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC7.81□□□□□ -1.16
HOXC9P31274 AC011497.2-201ENST00000600255 639 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 AC008115.3-201ENST00000614874 549 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC7.81□□□□□ -1.16
HOXC9P31274 AC016542.2-201ENST00000624201 619 ntBASIC7.81□□□□□ -1.16
HOXC9P31274 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
HOXC9P31274 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.81□□□□□ -1.16
HOXC9P31274 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
HOXC9P31274 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC7.81□□□□□ -1.16
HOXC9P31274 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
HOXC9P31274 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
HOXC9P31274 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC7.81□□□□□ -1.16
HOXC9P31274 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
HOXC9P31274 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC7.81□□□□□ -1.16
HOXC9P31274 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC7.8□□□□□ -1.16
HOXC9P31274 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
HOXC9P31274 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
HOXC9P31274 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
HOXC9P31274 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC7.8□□□□□ -1.16
HOXC9P31274 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC7.8□□□□□ -1.16
HOXC9P31274 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC7.8□□□□□ -1.16
HOXC9P31274 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
HOXC9P31274 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC7.8□□□□□ -1.16
HOXC9P31274 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC7.8□□□□□ -1.16
HOXC9P31274 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC7.8□□□□□ -1.16
HOXC9P31274 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.8□□□□□ -1.16
HOXC9P31274 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
HOXC9P31274 AL159987.1-201ENST00000347911 293 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 RNU6-171P-201ENST00000384354 107 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 HIST1H3PS1-201ENST00000404612 417 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC7.8□□□□□ -1.16
HOXC9P31274 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC7.8□□□□□ -1.16
HOXC9P31274 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC7.8□□□□□ -1.16
HOXC9P31274 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC7.8□□□□□ -1.16
HOXC9P31274 AL133445.1-201ENST00000467051 452 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 RPL32P33-201ENST00000487023 394 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 CYP4F27P-201ENST00000514557 494 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 AC139365.2-201ENST00000517972 253 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
HOXC9P31274 AC008429.4-201ENST00000521201 182 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC7.8□□□□□ -1.16
HOXC9P31274 SMARCE1P3-201ENST00000553649 1231 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 ADAM3B-201ENST00000569937 840 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC7.8□□□□□ -1.16
HOXC9P31274 IMMP1LP3-201ENST00000604197 224 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
HOXC9P31274 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC7.8□□□□□ -1.16
HOXC9P31274 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
HOXC9P31274 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC7.8□□□□□ -1.16
HOXC9P31274 AC022819.1-201ENST00000563495 3910 ntBASIC7.8□□□□□ -1.16
HOXC9P31274 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
HOXC9P31274 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
HOXC9P31274 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
HOXC9P31274 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
HOXC9P31274 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC7.79□□□□□ -1.16
HOXC9P31274 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC7.79□□□□□ -1.16
HOXC9P31274 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
HOXC9P31274 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC7.79□□□□□ -1.16
HOXC9P31274 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
HOXC9P31274 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC7.79□□□□□ -1.16
HOXC9P31274 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC7.79□□□□□ -1.16
HOXC9P31274 CFL1P1-202ENST00000432948 411 ntBASIC7.79□□□□□ -1.16
HOXC9P31274 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC7.79□□□□□ -1.16
HOXC9P31274 AC079922.1-201ENST00000443291 359 ntBASIC7.79□□□□□ -1.16
HOXC9P31274 CUBNP2-201ENST00000443534 1139 ntBASIC7.79□□□□□ -1.16
HOXC9P31274 AL162739.1-201ENST00000450606 307 ntBASIC7.79□□□□□ -1.16
HOXC9P31274 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC7.79□□□□□ -1.16
HOXC9P31274 RPS3AP15-201ENST00000483874 781 ntBASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms