Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNU1-64P-201ENST00000365443 163 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 PSMC1P2-201ENST00000423961 1204 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 AC093655.2-201ENST00000425735 631 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.86□□□□□ -1.47
COL6A3P12111 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.86□□□□□ -1.47
COL6A3P12111 RPL5P25-201ENST00000441148 775 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 AC111000.3-201ENST00000508057 576 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 AC091042.1-201ENST00000579213 173 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.86□□□□□ -1.47
COL6A3P12111 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 UNC45B-202ENST00000394570 5638 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
COL6A3P12111 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 CALN1-202ENST00000395275 9459 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
COL6A3P12111 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC5.86□□□□□ -1.47
COL6A3P12111 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.86□□□□□ -1.47
COL6A3P12111 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 CCDC88A-202ENST00000336838 9505 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
COL6A3P12111 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 OR6D1P-201ENST00000436165 939 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC5.85□□□□□ -1.47
COL6A3P12111 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC5.85□□□□□ -1.47
COL6A3P12111 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 AC023424.1-201ENST00000496058 459 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
COL6A3P12111 AC011487.3-201ENST00000593607 453 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 AL034374.2-201ENST00000605281 548 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 AC145423.1-201ENST00000605712 336 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 SLC6A15-201ENST00000266682 4879 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 MYO18A-202ENST00000527372 9992 ntAPPRIS P4 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 PIEZO2-203ENST00000503781 8259 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC5.85□□□□□ -1.47
COL6A3P12111 LINC00963-202ENST00000419300 9557 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.85□□□□□ -1.47
COL6A3P12111 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
COL6A3P12111 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.85□□□□□ -1.47
COL6A3P12111 USP48-203ENST00000374732 3037 ntTSL 2 BASIC5.85□□□□□ -1.47
COL6A3P12111 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 RPS3AP38-201ENST00000435889 763 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 EIF2S2P2-201ENST00000447161 982 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 AC026826.1-201ENST00000493002 361 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 COX6B1P5-201ENST00000509843 249 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.85□□□□□ -1.47
COL6A3P12111 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.85□□□□□ -1.47
COL6A3P12111 AC133555.2-201ENST00000550213 292 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 MRPS5P4-201ENST00000592830 325 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 ZNF365-211ENST00000614806 877 ntTSL 5 BASIC5.85□□□□□ -1.47
COL6A3P12111 AC012653.2-201ENST00000621880 420 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 AC008937.3-201ENST00000606813 1700 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 RN7SKP23-201ENST00000625159 4301 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC5.85□□□□□ -1.47
COL6A3P12111 RP1-201ENST00000220676 7100 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
COL6A3P12111 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
COL6A3P12111 RNA5SP332-201ENST00000391063 115 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.85□□□□□ -1.47
COL6A3P12111 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.85□□□□□ -1.47
COL6A3P12111 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC5.85□□□□□ -1.47
COL6A3P12111 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.85□□□□□ -1.47
COL6A3P12111 OR7E158P-201ENST00000524483 910 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC5.85□□□□□ -1.47
COL6A3P12111 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.85□□□□□ -1.47
COL6A3P12111 RNU4ATAC-201ENST00000580972 127 ntBASIC5.85□□□□□ -1.47
COL6A3P12111 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC5.85□□□□□ -1.47
COL6A3P12111 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 ANKFY1-209ENST00000574367 5033 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
COL6A3P12111 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 AL359091.1-201ENST00000449048 1734 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 TRIM59-208ENST00000543469 4615 ntTSL 5 BASIC5.84□□□□□ -1.47
COL6A3P12111 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC5.84□□□□□ -1.47
COL6A3P12111 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 AL078599.1-201ENST00000402075 293 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC5.84□□□□□ -1.47
COL6A3P12111 SCARNA9-201ENST00000530422 353 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 AC069366.1-201ENST00000583159 838 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 AC025574.2-201ENST00000615621 514 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 TACC2-210ENST00000369005 9673 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC5.84□□□□□ -1.47
COL6A3P12111 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
COL6A3P12111 RNU2-50P-201ENST00000410494 143 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 RN7SKP92-201ENST00000517266 244 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 AC024940.3-201ENST00000538551 316 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.84□□□□□ -1.47
COL6A3P12111 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.84□□□□□ -1.47
COL6A3P12111 AL512782.1-201ENST00000603093 364 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 AC095055.1-201ENST00000603472 1113 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC5.84□□□□□ -1.47
COL6A3P12111 PUM1-201ENST00000257075 5360 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 AC068870.1-201ENST00000563737 2455 ntBASIC5.84□□□□□ -1.47
COL6A3P12111 CEP350-202ENST00000367607 13491 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL6A3P12111 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 162.9 ms