Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC7.68□□□□□ -1.18
COL3A1P02461 AC018659.2-201ENST00000624690 715 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
COL3A1P02461 MIR193BHG-214ENST00000641765 509 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC7.68□□□□□ -1.18
COL3A1P02461 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL3A1P02461 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC7.68□□□□□ -1.18
COL3A1P02461 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC7.68□□□□□ -1.18
COL3A1P02461 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC7.68□□□□□ -1.18
COL3A1P02461 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL3A1P02461 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
COL3A1P02461 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
COL3A1P02461 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC7.68□□□□□ -1.18
COL3A1P02461 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC7.68□□□□□ -1.18
COL3A1P02461 RN7SKP81-201ENST00000365603 331 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
COL3A1P02461 RNA5SP91-201ENST00000390902 119 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 GABARAPL3-201ENST00000412799 354 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 Z68694.1-201ENST00000413929 841 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 AC019205.1-201ENST00000421830 730 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC7.68□□□□□ -1.18
COL3A1P02461 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC7.68□□□□□ -1.18
COL3A1P02461 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC7.68□□□□□ -1.18
COL3A1P02461 AC006335.2-201ENST00000437993 330 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 AC002504.1-201ENST00000438281 691 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 AC093719.1-201ENST00000480427 441 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 CYCSP22-201ENST00000517555 339 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 AC139697.1-201ENST00000548429 745 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC7.68□□□□□ -1.18
COL3A1P02461 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL3A1P02461 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC7.68□□□□□ -1.18
COL3A1P02461 AL137246.1-201ENST00000607072 977 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
COL3A1P02461 HYDIN2-203ENST00000614586 13885 ntBASIC7.68□□□□□ -1.18
COL3A1P02461 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
COL3A1P02461 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC7.67□□□□□ -1.18
COL3A1P02461 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL3A1P02461 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC7.67□□□□□ -1.18
COL3A1P02461 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL3A1P02461 IMMTP1-201ENST00000435590 2219 ntBASIC7.67□□□□□ -1.18
COL3A1P02461 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL3A1P02461 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
COL3A1P02461 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC7.67□□□□□ -1.18
COL3A1P02461 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC7.67□□□□□ -1.18
COL3A1P02461 SRRM1P3-201ENST00000426911 2678 ntBASIC7.67□□□□□ -1.18
COL3A1P02461 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL3A1P02461 PREPL-203ENST00000378520 2308 ntTSL 5 BASIC7.67□□□□□ -1.18
COL3A1P02461 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
COL3A1P02461 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC7.67□□□□□ -1.18
COL3A1P02461 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC7.67□□□□□ -1.18
COL3A1P02461 NIFKP3-201ENST00000417799 865 ntBASIC7.67□□□□□ -1.18
COL3A1P02461 RPL34P3-201ENST00000421454 338 ntBASIC7.67□□□□□ -1.18
COL3A1P02461 EIF4A1P6-201ENST00000448133 1210 ntBASIC7.67□□□□□ -1.18
COL3A1P02461 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC7.67□□□□□ -1.18
COL3A1P02461 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC7.67□□□□□ -1.18
COL3A1P02461 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC7.67□□□□□ -1.18
COL3A1P02461 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC7.67□□□□□ -1.18
COL3A1P02461 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.67□□□□□ -1.18
COL3A1P02461 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC7.67□□□□□ -1.18
COL3A1P02461 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC7.67□□□□□ -1.18
COL3A1P02461 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC7.67□□□□□ -1.18
COL3A1P02461 AC063977.5-201ENST00000601044 974 ntBASIC7.67□□□□□ -1.18
COL3A1P02461 AL136370.1-201ENST00000608166 691 ntBASIC7.67□□□□□ -1.18
COL3A1P02461 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC7.67□□□□□ -1.18
COL3A1P02461 AL034408.1-201ENST00000637712 664 ntBASIC7.67□□□□□ -1.18
COL3A1P02461 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
COL3A1P02461 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
COL3A1P02461 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL3A1P02461 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL3A1P02461 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
COL3A1P02461 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL3A1P02461 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
COL3A1P02461 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.66□□□□□ -1.18
COL3A1P02461 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL3A1P02461 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL3A1P02461 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
COL3A1P02461 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
COL3A1P02461 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL3A1P02461 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
COL3A1P02461 AC022164.1-201ENST00000568767 2673 ntBASIC7.66□□□□□ -1.18
COL3A1P02461 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL3A1P02461 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC7.66□□□□□ -1.18
COL3A1P02461 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC7.66□□□□□ -1.18
COL3A1P02461 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC7.66□□□□□ -1.18
COL3A1P02461 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC7.66□□□□□ -1.18
COL3A1P02461 RN7SL570P-201ENST00000484405 292 ntBASIC7.66□□□□□ -1.18
COL3A1P02461 AC106872.4-201ENST00000510050 523 ntBASIC7.66□□□□□ -1.18
COL3A1P02461 DPPA3P2-202ENST00000557188 1219 ntBASIC7.66□□□□□ -1.18
COL3A1P02461 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC7.66□□□□□ -1.18
COL3A1P02461 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC7.66□□□□□ -1.18
COL3A1P02461 AC005229.3-201ENST00000603438 323 ntBASIC7.66□□□□□ -1.18
COL3A1P02461 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC7.66□□□□□ -1.18
COL3A1P02461 AC004477.3-201ENST00000614061 590 ntBASIC7.66□□□□□ -1.18
COL3A1P02461 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC7.66□□□□□ -1.18
COL3A1P02461 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC7.66□□□□□ -1.18
COL3A1P02461 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
COL3A1P02461 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
COL3A1P02461 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
COL3A1P02461 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.66□□□□□ -1.18
COL3A1P02461 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms