Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC144BQ3MJ40 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC144BQ3MJ40 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 TINAG-203ENST00000370869 782 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AL391419.1-201ENST00000398901 1275 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 GPN3P1-201ENST00000423883 535 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 RPSAP40-201ENST00000442343 891 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC093166.3-201ENST00000448785 303 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 RN7SL187P-201ENST00000495587 303 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 HMGN1P16-201ENST00000508308 283 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC110760.3-202ENST00000515177 371 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC011853.1-201ENST00000518911 454 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC104115.2-201ENST00000523026 687 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC124891.1-201ENST00000536322 519 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC087894.1-201ENST00000538359 518 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC023158.1-201ENST00000561632 1025 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC106730.2-201ENST00000566641 540 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 CA10-204ENST00000570565 2276 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC068020.1-201ENST00000594215 661 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC130352.1-201ENST00000602979 661 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC004241.3-201ENST00000611728 517 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AL158062.1-201ENST00000619632 745 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AL035425.4-201ENST00000624509 1063 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 SNX18P10-201ENST00000625014 519 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 AC119674.1-204ENST00000641348 1343 ntBASIC7.65□□□□□ -1.18
CCDC144BQ3MJ40 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.19
CCDC144BQ3MJ40 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC7.65□□□□□ -1.19
CCDC144BQ3MJ40 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC7.65□□□□□ -1.19
CCDC144BQ3MJ40 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AC009135.2-201ENST00000624136 1768 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 OR2M1P-201ENST00000318104 951 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 MIR122-201ENST00000385044 85 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 RPS21P8-201ENST00000413365 247 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 BX664727.1-201ENST00000416024 466 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 VN1R42P-201ENST00000424651 344 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 RPL7P33-201ENST00000444159 742 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AL096829.2-201ENST00000446582 742 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AC098583.1-201ENST00000480875 255 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AC093870.1-201ENST00000506837 213 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 OR52K3P-201ENST00000531655 943 ntBASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 OLR1-209ENST00000543993 822 ntTSL 2 BASIC7.64□□□□□ -1.19
CCDC144BQ3MJ40 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC7.64□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms