Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AP001804.1-201ENST00000526868 919 ntBASIC5.43□□□□□ -1.54
FOXF1Q12946 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
FOXF1Q12946 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXF1Q12946 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.43□□□□□ -1.54
FOXF1Q12946 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC5.43□□□□□ -1.54
FOXF1Q12946 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXF1Q12946 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
FOXF1Q12946 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.43□□□□□ -1.54
FOXF1Q12946 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXF1Q12946 AC245014.3-201ENST00000618589 347 ntBASIC5.43□□□□□ -1.54
FOXF1Q12946 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXF1Q12946 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXF1Q12946 AL136228.1-201ENST00000622221 319 ntBASIC5.43□□□□□ -1.54
FOXF1Q12946 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
FOXF1Q12946 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
FOXF1Q12946 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.43□□□□□ -1.54
FOXF1Q12946 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.43□□□□□ -1.54
FOXF1Q12946 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
FOXF1Q12946 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXF1Q12946 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
FOXF1Q12946 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC114876.1-201ENST00000490962 1366 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC012254.3-201ENST00000591183 2117 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
FOXF1Q12946 CASC19-238ENST00000641523 1558 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
FOXF1Q12946 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
FOXF1Q12946 RNA5SP433-201ENST00000364491 114 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 RNA5SP211-201ENST00000365516 117 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 AL096711.1-201ENST00000404780 554 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.42□□□□□ -1.54
FOXF1Q12946 RPS14P4-201ENST00000415880 418 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.42□□□□□ -1.54
FOXF1Q12946 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC005077.1-201ENST00000449226 375 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 RN7SL269P-201ENST00000467795 305 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 AC092865.4-201ENST00000477936 615 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC008629.2-201ENST00000503783 483 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC110056.1-201ENST00000525759 911 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 AP003396.4-201ENST00000527574 265 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 BCAS2P1-201ENST00000528022 632 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXF1Q12946 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.42□□□□□ -1.54
FOXF1Q12946 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.42□□□□□ -1.54
FOXF1Q12946 RPA2P1-201ENST00000556557 721 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXF1Q12946 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.42□□□□□ -1.54
FOXF1Q12946 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
FOXF1Q12946 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.42□□□□□ -1.54
FOXF1Q12946 QRSL1P1-201ENST00000400977 1540 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 THAP12P9-201ENST00000503971 2360 ntBASIC5.42□□□□□ -1.54
FOXF1Q12946 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
FOXF1Q12946 AP000432.2-201ENST00000624164 2048 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
FOXF1Q12946 AC022164.1-201ENST00000568767 2673 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.41□□□□□ -1.54
FOXF1Q12946 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
FOXF1Q12946 RBPJP7-201ENST00000442803 1447 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 RBPJP5-201ENST00000449433 1447 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
FOXF1Q12946 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
FOXF1Q12946 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
FOXF1Q12946 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
FOXF1Q12946 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
FOXF1Q12946 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
FOXF1Q12946 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
FOXF1Q12946 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.41□□□□□ -1.54
FOXF1Q12946 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
FOXF1Q12946 CXADRP1-201ENST00000398098 1095 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 AL096800.1-201ENST00000405326 893 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 RN7SKP240-201ENST00000410583 375 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 MYL6P5-201ENST00000412707 459 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.41□□□□□ -1.54
FOXF1Q12946 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.41□□□□□ -1.54
FOXF1Q12946 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.41□□□□□ -1.54
FOXF1Q12946 AL445928.1-201ENST00000435545 222 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 AC110602.1-201ENST00000437414 318 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 RPS7P3-201ENST00000443360 580 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 CUBNP2-201ENST00000443534 1139 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 CFL1P4-201ENST00000451536 498 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.41□□□□□ -1.54
FOXF1Q12946 CST12P-201ENST00000457644 362 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 AC023245.1-201ENST00000468501 517 ntBASIC5.41□□□□□ -1.54
FOXF1Q12946 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.41□□□□□ -1.54
FOXF1Q12946 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.41□□□□□ -1.54
FOXF1Q12946 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.41□□□□□ -1.54
FOXF1Q12946 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.41□□□□□ -1.54
FOXF1Q12946 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms