Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDCBPO00560 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.05□□□□□ -1.6
SDCBPO00560 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
SDCBPO00560 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
SDCBPO00560 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SDCBPO00560 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.05□□□□□ -1.6
SDCBPO00560 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.05□□□□□ -1.6
SDCBPO00560 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC5.05□□□□□ -1.6
SDCBPO00560 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.05□□□□□ -1.6
SDCBPO00560 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.05□□□□□ -1.6
SDCBPO00560 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
SDCBPO00560 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 AC027279.4-201ENST00000624371 2072 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SDCBPO00560 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.05□□□□□ -1.6
SDCBPO00560 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 RN7SKP128-201ENST00000364270 303 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 RN7SKP166-201ENST00000410812 305 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 VN1R20P-201ENST00000425215 966 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC5.05□□□□□ -1.6
SDCBPO00560 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.05□□□□□ -1.6
SDCBPO00560 AC005017.1-201ENST00000482002 490 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 RPL34P33-201ENST00000486062 334 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC5.05□□□□□ -1.6
SDCBPO00560 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.05□□□□□ -1.6
SDCBPO00560 SNX18P25-201ENST00000510539 758 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.05□□□□□ -1.6
SDCBPO00560 GLYAT-203ENST00000529732 1070 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SDCBPO00560 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC5.05□□□□□ -1.6
SDCBPO00560 AP001823.1-201ENST00000604056 1003 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 NQO2-209ENST00000606474 470 ntTSL 3 BASIC5.05□□□□□ -1.6
SDCBPO00560 AC010325.3-201ENST00000641084 394 ntBASIC5.05□□□□□ -1.6
SDCBPO00560 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
SDCBPO00560 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SDCBPO00560 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.05□□□□□ -1.6
SDCBPO00560 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.05□□□□□ -1.6
SDCBPO00560 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDCBPO00560 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.04□□□□□ -1.6
SDCBPO00560 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SDCBPO00560 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.04□□□□□ -1.6
SDCBPO00560 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 EIF3EP1-201ENST00000433978 1316 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 AC092451.3-201ENST00000625067 1343 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.04□□□□□ -1.6
SDCBPO00560 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
SDCBPO00560 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SDCBPO00560 AC011416.1-201ENST00000514947 1732 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.04□□□□□ -1.6
SDCBPO00560 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
SDCBPO00560 AL034417.1-201ENST00000399343 800 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 AL139805.1-201ENST00000407837 289 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 AC245096.1-201ENST00000413104 546 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC5.04□□□□□ -1.6
SDCBPO00560 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC5.04□□□□□ -1.6
SDCBPO00560 LINC00328-2P-201ENST00000436585 219 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 AL512593.1-201ENST00000444758 779 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 RPS27P20-201ENST00000492051 246 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.04□□□□□ -1.6
SDCBPO00560 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC5.04□□□□□ -1.6
SDCBPO00560 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.04□□□□□ -1.6
SDCBPO00560 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.04□□□□□ -1.6
SDCBPO00560 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.04□□□□□ -1.6
SDCBPO00560 AC060780.2-201ENST00000589047 198 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 AC012676.3-201ENST00000614983 479 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.04□□□□□ -1.6
SDCBPO00560 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC5.04□□□□□ -1.6
SDCBPO00560 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.04□□□□□ -1.6
SDCBPO00560 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 BCORP1-203ENST00000513194 5093 ntBASIC5.04□□□□□ -1.6
SDCBPO00560 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SDCBPO00560 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms