Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HMGN2P36-201ENST00000529541 409 ntBASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC11.48□□□□□ -0.57
SHROOM4Q9ULL8 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 GAPDHP24-201ENST00000328713 983 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 RNU11-6P-201ENST00000391127 133 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 RPA2P2-201ENST00000419698 796 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 FABP7P2-201ENST00000429946 379 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 RPA2P3-201ENST00000533268 770 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 ASB8-215ENST00000540782 659 ntTSL 3 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 AC103968.1-201ENST00000557841 573 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 SETP3-201ENST00000581726 813 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 AL021918.2-201ENST00000613415 194 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 RN7SL544P-201ENST00000617232 284 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 RN7SL763P-201ENST00000620922 284 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 AC022726.2-201ENST00000634673 547 ntBASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 DLC1-202ENST00000316609 1837 ntTSL 2 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
SHROOM4Q9ULL8 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 RPS23P6-201ENST00000466136 431 ntBASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 AC005532.2-201ENST00000467154 373 ntBASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 WBP1LP3-201ENST00000523033 208 ntBASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 AC022819.1-201ENST00000563495 3910 ntBASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 MIR1269B-201ENST00000580405 75 ntBASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 AL137246.2-201ENST00000613439 662 ntBASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
SHROOM4Q9ULL8 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC11.46□□□□□ -0.58
SHROOM4Q9ULL8 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
SHROOM4Q9ULL8 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
SHROOM4Q9ULL8 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC11.46□□□□□ -0.58
SHROOM4Q9ULL8 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
SHROOM4Q9ULL8 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
SHROOM4Q9ULL8 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.58
SHROOM4Q9ULL8 AC089998.1-201ENST00000548575 3141 ntBASIC11.46□□□□□ -0.58
SHROOM4Q9ULL8 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 AL049840.6-202ENST00000603373 279 ntBASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 AC141002.1-201ENST00000607025 279 ntBASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 HOTTIP_3.1-201ENST00000619957 337 ntBASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 LRRC37A16P-202ENST00000586022 3725 ntBASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC11.45□□□□□ -0.58
SHROOM4Q9ULL8 RN7SKP103-201ENST00000363848 320 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 FABP12P1-201ENST00000401911 322 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AC108161.1-201ENST00000461060 402 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 SUMO2P7-201ENST00000511179 285 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 IGLV3-30-201ENST00000524362 298 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AC073342.3-201ENST00000624211 193 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 AC007938.2-201ENST00000604666 2634 ntBASIC11.44□□□□□ -0.58
SHROOM4Q9ULL8 CCNB1IP1P1-201ENST00000428976 839 ntBASIC11.44□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms