Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 uc_338.9-201ENST00000617424 182 ntBASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 AL121985.3-201ENST00000620690 523 ntBASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 ASB8-218ENST00000629941 278 ntTSL 5 BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 GLUD1P2-202ENST00000630097 606 ntTSL 3 BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 ECM1P2-201ENST00000503354 1577 ntBASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 ZNF611-202ENST00000453741 4380 ntTSL 4 BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
TRAIPQ9BWF2 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 ZNF585B-204ENST00000531805 2971 ntTSL 2 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 UEVLD-205ENST00000396197 4156 ntAPPRIS P1 TSL 5 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 BEST3-205ENST00000488961 2878 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 HESX1-201ENST00000295934 981 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 MIR575-201ENST00000385013 94 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AL445238.1-204ENST00000400311 463 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC017035.1-201ENST00000411999 1115 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 RPS21P8-201ENST00000413365 247 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 TNPO1P1-201ENST00000423641 1138 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC073143.1-201ENST00000436316 395 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AL731892.1-201ENST00000437364 1192 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AL031663.1-201ENST00000437445 219 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC005040.1-201ENST00000437783 482 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 OSTCP2-201ENST00000437956 444 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 DBIL5P2-201ENST00000443827 253 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 HMGB1P16-201ENST00000447155 540 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AL133480.2-201ENST00000456723 487 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC025271.1-201ENST00000485045 429 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC117395.1-201ENST00000487390 403 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC104971.1-201ENST00000495117 578 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 IGLV1-62-201ENST00000518003 441 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 HMGB1P23-201ENST00000518743 568 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC114550.1-201ENST00000518846 573 ntTSL 4 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 EIF4A2P5-201ENST00000529914 499 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 PDCL3P1-201ENST00000534575 734 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC092747.2-201ENST00000545069 983 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 ULK4P2-202ENST00000564187 492 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 MIR8082-201ENST00000612488 81 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC121761.2-201ENST00000617300 689 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC004943.3-201ENST00000624116 600 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC015726.3-201ENST00000624501 418 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC026108.1-201ENST00000635444 547 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 RNF6P1-201ENST00000444889 1784 ntBASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 FASLG-202ENST00000367721 1888 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC8.04□□□□□ -1.12
TRAIPQ9BWF2 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 AC068733.2-201ENST00000605434 1418 ntBASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 ZNF677-206ENST00000598513 3497 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 AL669831.5-218ENST00000591702 1873 ntBASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 AP005901.5-201ENST00000545779 1796 ntBASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 OR10W1-201ENST00000395079 1469 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
TRAIPQ9BWF2 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 171.9 ms