Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AL161742.1-201ENST00000418154 584 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AL672212.1-201ENST00000422246 400 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AC092106.1-201ENST00000444291 373 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 RBMY2BP-202ENST00000451071 1156 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 RN7SL372P-201ENST00000461982 298 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 OR4D12P-201ENST00000509361 911 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AC060766.1-201ENST00000590824 627 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AL589743.6-201ENST00000611025 117 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AC008833.1-201ENST00000611633 691 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 MIR6731-201ENST00000614863 72 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AP003108.4-201ENST00000623917 878 ntBASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC28BQ9BUN5 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC130304.1-201ENST00000622942 2385 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 OR52H1-201ENST00000322653 1057 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 RNA5SP429-201ENST00000363688 109 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 FTH1P26-201ENST00000406512 701 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 RN7SKP117-201ENST00000410175 264 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 DHFRP2-201ENST00000414224 547 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC002127.1-201ENST00000421305 225 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AL512593.1-201ENST00000444758 779 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 ACA64.4-201ENST00000459070 127 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 RPS4XP12-201ENST00000461747 709 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC239804.1-201ENST00000466343 869 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 RN7SKP288-201ENST00000516227 268 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 Y_RNA.710-201ENST00000516975 110 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC023080.1-201ENST00000551663 931 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC007346.2-201ENST00000564816 892 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AL163952.1-202ENST00000569625 600 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AL031429.2-201ENST00000602605 649 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 SNX18P12-201ENST00000624821 759 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC120036.2-201ENST00000509729 1474 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 AC020656.2-201ENST00000613291 5309 ntBASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC28BQ9BUN5 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC28BQ9BUN5 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC28BQ9BUN5 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC28BQ9BUN5 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC28BQ9BUN5 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC28BQ9BUN5 AC097063.1-201ENST00000426714 1797 ntBASIC5.86□□□□□ -1.47
CCDC28BQ9BUN5 AC009220.2-201ENST00000489759 1751 ntBASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms