Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 RN7SKP81-201ENST00000365603 331 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AL512422.1-201ENST00000407033 553 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 RPL23AP19-201ENST00000436229 369 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 MORF4-201ENST00000447135 971 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 RPL31P15-201ENST00000449770 338 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 CFL1P4-201ENST00000451536 498 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 OR2A1-AS1-202ENST00000467944 422 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC007998.1-201ENST00000474156 672 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 PPIAP19-201ENST00000486414 492 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC106872.4-201ENST00000510050 523 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 SNORD46.2-201ENST00000516021 102 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 Y_RNA.667-201ENST00000516212 107 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 RNA5SP400-201ENST00000517155 111 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AP001858.2-201ENST00000536213 601 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC073916.1-201ENST00000545095 130 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC027667.1-201ENST00000545814 304 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 MTATP6P25-201ENST00000574491 261 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 CYCSP1-201ENST00000604815 315 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AL683813.2-201ENST00000605245 502 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AL591167.1-201ENST00000607321 456 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC073488.3-201ENST00000631611 778 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AC105749.1-201ENST00000631338 2008 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 AL731556.1-201ENST00000394628 3711 ntBASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC3Q9BQI4 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 CDY5P-201ENST00000411487 1580 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 CDY9P-201ENST00000451397 1580 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC011369.2-201ENST00000624423 1567 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AL731532.1-201ENST00000623972 4236 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 RNA5SP273-201ENST00000362484 113 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 RPS7P8-201ENST00000418311 581 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 NXT1P1-201ENST00000458481 316 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 RN7SL174P-201ENST00000475578 289 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 PSMA2P2-201ENST00000504319 686 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 RNA5SP434-201ENST00000516647 121 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC021733.2-201ENST00000518830 497 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC021269.1-201ENST00000526860 705 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC090236.2-201ENST00000587933 1101 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AL513218.1-201ENST00000606527 391 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC006924.1-201ENST00000610750 559 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC079414.3-201ENST00000612986 1090 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC024255.1-201ENST00000614376 102 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC002044.3-201ENST00000623314 541 ntBASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC063952.1-203ENST00000634410 658 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms