Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
VPS39Q96JC1 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 MIR551B-201ENST00000384984 96 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS39Q96JC1 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 RPEP4-201ENST00000437636 602 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 CXCR2P1-202ENST00000443392 1074 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 VN1R96P-201ENST00000446052 858 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC020633.1-201ENST00000468439 2247 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 Vault.2-201ENST00000516519 98 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 Y_RNA.710-201ENST00000516975 110 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC239868.2-201ENST00000564237 4527 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 LINC00556-201ENST00000569603 412 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 MIR212-201ENST00000586026 110 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 LSM1P2-201ENST00000604911 322 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC022106.1-201ENST00000612834 766 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC005899.6-201ENST00000620729 297 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 CR382285.2-201ENST00000624662 1495 ntBASIC6.12□□□□□ -1.43
VPS39Q96JC1 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS39Q96JC1 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS39Q96JC1 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS39Q96JC1 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.12□□□□□ -1.43
VPS39Q96JC1 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
VPS39Q96JC1 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
VPS39Q96JC1 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 HCFC2P1-201ENST00000392864 1592 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 RN7SKP186-201ENST00000365371 303 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 YWHAZP4-201ENST00000392459 708 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 RN7SKP144-201ENST00000411108 279 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 AL356968.2-201ENST00000412769 1257 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 PA2G4P1-201ENST00000442248 1197 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 RNU6-943P-201ENST00000516960 98 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 TPM3P3-201ENST00000521343 354 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 GLYAT-203ENST00000529732 1070 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 RN7SL66P-201ENST00000582099 264 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 AC008555.7-201ENST00000605008 583 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 AC141002.1-201ENST00000607025 279 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 RN7SL261P-201ENST00000613441 282 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 AL138693.1-201ENST00000622219 129 ntBASIC6.11□□□□□ -1.43
VPS39Q96JC1 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
VPS39Q96JC1 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6.11□□□□□ -1.43
VPS39Q96JC1 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms