Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC013488.1-201ENST00000526618 1838 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 TNPO1P2-201ENST00000426249 2665 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC112243.1-201ENST00000623949 3851 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 RNU1-134P-201ENST00000362935 165 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 RNU1-49P-201ENST00000363468 159 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 RNA5SP478-201ENST00000364657 115 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 Z93019.1-201ENST00000416450 973 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 CLUHP1-201ENST00000435012 1190 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 OR3D1P-201ENST00000438288 955 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC006539.1-201ENST00000481419 501 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AP004607.6-201ENST00000525033 1202 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC093829.1-201ENST00000506662 1618 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 AL161901.1-201ENST00000624954 3425 ntBASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HDDC3Q8N4P3 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AP002370.1-201ENST00000528055 1602 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 ZNF101P1-201ENST00000435701 1720 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 FAM32BP-201ENST00000344033 333 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 SNORA21-201ENST00000362423 132 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 CBX1P3-201ENST00000413296 527 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 DNAJC19P5-201ENST00000443295 316 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 MYO5BP2-201ENST00000449815 1277 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC002553.3-201ENST00000453002 341 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 RANP2-201ENST00000456833 229 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 RN7SL629P-201ENST00000489622 285 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC090958.1-201ENST00000511122 351 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 RNA5SP340-201ENST00000517132 107 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AP001858.2-201ENST00000536213 601 ntBASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC6.26□□□□□ -1.41
HDDC3Q8N4P3 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms