Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 IGBP1P1-201ENST00000554337 1009 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 MIR6820-201ENST00000611508 62 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 AL121612.2-201ENST00000612261 482 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 MIR6810-201ENST00000622701 70 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 AC073342.3-201ENST00000624211 193 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC6.32□□□□□ -1.4
COL4A4P53420 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC6.32□□□□□ -1.4
COL4A4P53420 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
COL4A4P53420 ITPK1-AS1-201ENST00000553639 4701 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 USP9YP3-201ENST00000434481 1766 ntBASIC6.32□□□□□ -1.4
COL4A4P53420 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL4A4P53420 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 MAP2-207ENST00000447185 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 CYP4Z2P-201ENST00000423332 1512 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
COL4A4P53420 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.31□□□□□ -1.4
COL4A4P53420 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6.31□□□□□ -1.4
COL4A4P53420 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.31□□□□□ -1.4
COL4A4P53420 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC6.31□□□□□ -1.4
COL4A4P53420 AL606490.8-201ENST00000441624 319 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 LRRC37A14P-201ENST00000452297 462 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 RPL35AP19-201ENST00000469425 329 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 AC022215.1-201ENST00000481770 362 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 RN7SL808P-201ENST00000496066 299 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC6.31□□□□□ -1.4
COL4A4P53420 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.31□□□□□ -1.4
COL4A4P53420 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC6.31□□□□□ -1.4
COL4A4P53420 RNA5SP228-201ENST00000516232 133 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 OR5D15P-201ENST00000531671 942 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC6.31□□□□□ -1.4
COL4A4P53420 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC6.31□□□□□ -1.4
COL4A4P53420 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC6.31□□□□□ -1.4
COL4A4P53420 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.31□□□□□ -1.4
COL4A4P53420 TXNP4-201ENST00000575018 310 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC6.31□□□□□ -1.4
COL4A4P53420 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.31□□□□□ -1.4
COL4A4P53420 EEF1A1P14-201ENST00000421195 1376 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
COL4A4P53420 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC6.31□□□□□ -1.4
COL4A4P53420 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.31□□□□□ -1.4
COL4A4P53420 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 YES1P1-201ENST00000418510 1628 ntBASIC6.31□□□□□ -1.4
COL4A4P53420 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC6.31□□□□□ -1.4
COL4A4P53420 MYO10-201ENST00000274203 11456 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
COL4A4P53420 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL4A4P53420 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 HSPD1P8-201ENST00000400121 1658 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 AC068769.1-201ENST00000474767 2426 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 AC114876.1-201ENST00000490962 1366 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC6.3□□□□□ -1.4
COL4A4P53420 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
COL4A4P53420 GABARAPL3-201ENST00000412799 354 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC6.3□□□□□ -1.4
COL4A4P53420 AC007562.1-201ENST00000421819 517 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC6.3□□□□□ -1.4
COL4A4P53420 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC6.3□□□□□ -1.4
COL4A4P53420 AC245047.2-201ENST00000441060 530 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 AC023274.2-201ENST00000445264 521 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 AL162739.1-201ENST00000450606 307 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 RANP1-206ENST00000455094 651 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 RPSAP50-201ENST00000481955 852 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 AC093763.2-201ENST00000505334 1223 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC6.3□□□□□ -1.4
COL4A4P53420 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC6.3□□□□□ -1.4
COL4A4P53420 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC6.3□□□□□ -1.4
COL4A4P53420 SETP3-201ENST00000581726 813 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 OR11H2-202ENST00000641517 1085 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 Z82209.2-201ENST00000623410 2012 ntBASIC6.3□□□□□ -1.4
COL4A4P53420 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.3□□□□□ -1.4
COL4A4P53420 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL4A4P53420 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms