Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC8.17□□□□□ -1.1
RFX1P22670 ZNF544-217ENST00000600220 2837 ntAPPRIS ALT2 TSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC8.17□□□□□ -1.1
RFX1P22670 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 AC126773.4-201ENST00000612545 3043 ntBASIC8.17□□□□□ -1.1
RFX1P22670 ZNF844-202ENST00000441304 2036 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
RFX1P22670 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC8.17□□□□□ -1.1
RFX1P22670 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
RFX1P22670 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 RNU6-185P-201ENST00000384421 107 ntBASIC8.17□□□□□ -1.1
RFX1P22670 Y_RNA.553-201ENST00000384670 102 ntBASIC8.17□□□□□ -1.1
RFX1P22670 RNA5SP35-201ENST00000391257 129 ntBASIC8.17□□□□□ -1.1
RFX1P22670 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 NPM1P38-201ENST00000403835 865 ntBASIC8.17□□□□□ -1.1
RFX1P22670 U3.31-201ENST00000408113 216 ntBASIC8.17□□□□□ -1.1
RFX1P22670 SNORA11.5-201ENST00000408163 128 ntBASIC8.17□□□□□ -1.1
RFX1P22670 RN7SKP137-201ENST00000411074 307 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 ELOCP17-201ENST00000414751 326 ntBASIC8.17□□□□□ -1.1
RFX1P22670 DNAJA1P2-201ENST00000421360 1197 ntBASIC8.17□□□□□ -1.1
RFX1P22670 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 AP001324.1-201ENST00000428553 399 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AL022331.1-201ENST00000429025 477 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 PIP5K1P2-201ENST00000437005 1120 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 UBQLN1P1-207ENST00000441056 1169 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 AP000936.2-201ENST00000447151 681 ntBASIC8.17□□□□□ -1.1
RFX1P22670 RHEBP1-201ENST00000448647 556 ntBASIC8.17□□□□□ -1.1
RFX1P22670 MGAT2P1-201ENST00000449718 797 ntBASIC8.17□□□□□ -1.1
RFX1P22670 RHEBP2-201ENST00000450289 600 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC8.17□□□□□ -1.1
RFX1P22670 SLAMF6P1-201ENST00000451067 602 ntBASIC8.17□□□□□ -1.1
RFX1P22670 CEACAMP11-201ENST00000455211 583 ntBASIC8.17□□□□□ -1.1
RFX1P22670 GYG1P1-201ENST00000460864 698 ntBASIC8.17□□□□□ -1.1
RFX1P22670 SRRM1P2-201ENST00000464531 1192 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AC005550.2-201ENST00000476382 318 ntBASIC8.17□□□□□ -1.1
RFX1P22670 RPL5P14-201ENST00000494197 878 ntBASIC8.17□□□□□ -1.1
RFX1P22670 RN7SL569P-201ENST00000494652 288 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 AC079395.1-201ENST00000510981 262 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AC110775.1-201ENST00000513721 462 ntBASIC8.17□□□□□ -1.1
RFX1P22670 Y_RNA.695-201ENST00000516715 107 ntBASIC8.17□□□□□ -1.1
RFX1P22670 RNU6-678P-201ENST00000516832 109 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 AP005597.2-201ENST00000526238 341 ntBASIC8.17□□□□□ -1.1
RFX1P22670 LINC02443-201ENST00000536518 585 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 AC013356.3-201ENST00000558601 584 ntTSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC8.17□□□□□ -1.1
RFX1P22670 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC8.17□□□□□ -1.1
RFX1P22670 SNORD39.2-201ENST00000579995 76 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC8.17□□□□□ -1.1
RFX1P22670 AC012370.2-202ENST00000600508 1099 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 AC024085.1-201ENST00000604299 432 ntBASIC8.17□□□□□ -1.1
RFX1P22670 RNU6-84P-201ENST00000607737 102 ntBASIC8.17□□□□□ -1.1
RFX1P22670 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AC099842.1-201ENST00000619919 596 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AL356121.2-201ENST00000624715 780 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 AC092192.1-201ENST00000633154 1018 ntBASIC8.17□□□□□ -1.1
RFX1P22670 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 AC119674.1-212ENST00000641155 993 ntBASIC8.17□□□□□ -1.1
RFX1P22670 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 FAM122C-201ENST00000370784 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC8.17□□□□□ -1.1
RFX1P22670 EEF1A1P4-201ENST00000359165 1405 ntBASIC8.17□□□□□ -1.1
RFX1P22670 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC8.17□□□□□ -1.1
RFX1P22670 COL6A4P1-202ENST00000487147 4317 ntBASIC8.17□□□□□ -1.1
RFX1P22670 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC8.17□□□□□ -1.1
RFX1P22670 CYP4Z2P-201ENST00000423332 1512 ntBASIC8.17□□□□□ -1.1
RFX1P22670 CWC15-201ENST00000279839 1576 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 AC027514.1-201ENST00000588561 1603 ntBASIC8.17□□□□□ -1.1
RFX1P22670 DCP1A-201ENST00000294241 1853 ntTSL 2 BASIC8.17□□□□□ -1.1
RFX1P22670 OSGIN2-201ENST00000297438 4209 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC8.17□□□□□ -1.1
RFX1P22670 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
RFX1P22670 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC8.16□□□□□ -1.1
RFX1P22670 AC003973.3-201ENST00000624863 2822 ntBASIC8.16□□□□□ -1.1
RFX1P22670 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC8.16□□□□□ -1.1
RFX1P22670 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC8.16□□□□□ -1.1
RFX1P22670 KIF4A-201ENST00000374403 4348 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
RFX1P22670 CHAF1B-201ENST00000314103 4480 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
RFX1P22670 ZMYM2-202ENST00000382871 5051 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 143.9 ms