Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 RNU6-867P-201ENST00000364956 107 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 MIR301B-201ENST00000390813 78 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 SLC9B1P2-201ENST00000398120 1184 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 RN7SKP30-201ENST00000411373 334 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 TRGV6-201ENST00000417928 299 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 TCEA1P2-201ENST00000420496 906 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 NANOGP5-201ENST00000424456 877 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 GAPDHP69-201ENST00000425504 1008 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 DLGAP5P1-201ENST00000430307 464 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AL353653.1-202ENST00000435177 539 ntTSL 3 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC046176.1-201ENST00000435260 1170 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 MYL6P3-201ENST00000436904 432 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC016772.1-201ENST00000444170 1261 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AL353803.3-201ENST00000444641 335 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 SEC62-AS1-201ENST00000479626 346 ntTSL 5 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 MTCO3P35-201ENST00000485582 781 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 DCAF13P2-201ENST00000514188 555 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 CASP5-209ENST00000531367 879 ntTSL 5 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC007537.1-201ENST00000539347 327 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 NXPE2P1-201ENST00000543705 726 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 DCN-215ENST00000550099 719 ntTSL 2 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AL359704.2-201ENST00000604335 521 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 GMDS-AS1-215ENST00000606884 580 ntTSL 2 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AC131235.4-201ENST00000609288 620 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 VN1R74P-201ENST00000613259 503 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 MIR6731-201ENST00000614863 72 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 MIR6737-201ENST00000617385 70 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AL158062.1-201ENST00000619632 745 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 AL445528.2-201ENST00000620582 470 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 Six3os1_1.1-201ENST00000620900 87 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 DLST-216ENST00000626051 252 ntTSL 5 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 BX649567.1-201ENST00000642071 1134 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 MAPK10-357ENST00000641831 2858 ntBASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC7.8□□□□□ -1.16
CCDC39Q9UFE4 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 TUBBP10-201ENST00000427668 1301 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 ZNF710-AS1-202ENST00000620791 2133 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC104958.1-201ENST00000509350 1973 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 HSPD1P14-201ENST00000432666 1618 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 RNU6-819P-201ENST00000364116 107 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 BMS1P3-201ENST00000372011 932 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 MRPS33-202ENST00000393008 853 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 RNA5SP251-201ENST00000410614 137 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AL360013.1-201ENST00000419031 858 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AC092570.3-201ENST00000420113 693 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 SNRPEP5-201ENST00000425442 278 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 OR5BE1P-201ENST00000425977 939 ntBASIC7.79□□□□□ -1.16
CCDC39Q9UFE4 AL035407.1-201ENST00000429211 571 ntBASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 488.8 ms