Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MTND6P12-201ENST00000428247 522 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 CDY8P-201ENST00000428380 1279 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 PPIAP10-201ENST00000438675 458 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AL353662.1-201ENST00000439099 327 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 MORF4-201ENST00000447135 971 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 CDY20P-201ENST00000447528 1279 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 VPS25P1-201ENST00000455691 508 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AC092824.1-201ENST00000483524 576 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AC008945.1-201ENST00000505144 499 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 RN7SKP238-201ENST00000516483 249 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AC073581.1-201ENST00000519036 575 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 NPIPB1P-202ENST00000588786 828 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AC126175.1-201ENST00000617041 758 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AC245014.3-201ENST00000618589 347 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AL512652.1-201ENST00000619006 500 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 AC091305.2-201ENST00000624049 1576 ntBASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HDDC3Q8N4P3 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AC105235.1-201ENST00000623208 1816 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 MIR130B-202ENST00000385018 82 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 U3.43-201ENST00000410734 213 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AC130360.1-201ENST00000425489 1117 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 GAPDHP48-201ENST00000436626 961 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AC023141.3-201ENST00000436698 278 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AC002075.1-201ENST00000457396 676 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AC068522.1-201ENST00000482895 345 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AL158068.1-201ENST00000506116 616 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 OR5H7P-201ENST00000514084 930 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 Y_RNA.710-201ENST00000516975 110 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 IGHVIII-67-4-201ENST00000524281 296 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AC130365.2-201ENST00000525882 1201 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AC090022.1-201ENST00000546569 311 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AC009120.3-201ENST00000563335 499 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 MRO-208ENST00000588444 866 ntTSL 3 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 TEX41-218ENST00000596540 882 ntTSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 AC013244.1-201ENST00000604279 193 ntBASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.28□□□□□ -1.4
HDDC3Q8N4P3 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms