Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AC093278.2-201ENST00000564956 2485 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 ZNF402P-201ENST00000404435 3100 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AC005702.3-201ENST00000585345 1447 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 OR5T3-201ENST00000303059 1023 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AL391361.1-201ENST00000405580 489 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 NPM1P22-201ENST00000427761 952 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AL121776.1-201ENST00000429337 372 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 RSL24D1P8-201ENST00000434442 492 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 ATP5LP2-201ENST00000440646 311 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 GAPDHP33-201ENST00000443168 1013 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 SNX18P26-201ENST00000458433 740 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AC098847.1-201ENST00000473094 348 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AC128716.1-201ENST00000475129 166 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AC018645.1-201ENST00000505003 109 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 RNU6-943P-201ENST00000516960 98 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 IGKV2-18-201ENST00000522607 343 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 MRPS21P8-201ENST00000569196 235 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AC023389.2-201ENST00000580031 955 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 SNORA16A-202ENST00000628458 135 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AL157831.2-201ENST00000564681 3095 ntBASIC6.2□□□□□ -1.42
COL28A1Q2UY09 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.2□□□□□ -1.42
COL28A1Q2UY09 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 CASC19-255ENST00000641733 1385 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 MIR541-201ENST00000401360 84 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 OR2W4P-201ENST00000406496 926 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 NANOGP4-201ENST00000427230 913 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 CRYGGP-201ENST00000443337 145 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 HMGN1P36-201ENST00000446623 298 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 OR6C72P-201ENST00000451403 892 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 ACA64.1-201ENST00000459171 127 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 RPSAP39-201ENST00000467439 883 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 TRBV8-1-201ENST00000481590 279 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 RPL12P30-201ENST00000488389 499 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC063943.2-201ENST00000495697 534 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC021146.11-201ENST00000503319 491 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 OR7E99P-201ENST00000505750 922 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 ATG10-208ENST00000513634 618 ntTSL 2 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 OR5H7P-201ENST00000514084 930 ntBASIC6.19□□□□□ -1.42
COL28A1Q2UY09 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.19□□□□□ -1.42
COL28A1Q2UY09 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms