Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC073488.3-201ENST00000631611 778 ntBASIC5.73□□□□□ -1.49
LIM2P55344 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LIM2P55344 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.73□□□□□ -1.49
LIM2P55344 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.73□□□□□ -1.49
LIM2P55344 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.73□□□□□ -1.49
LIM2P55344 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LIM2P55344 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.72□□□□□ -1.49
LIM2P55344 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
LIM2P55344 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
LIM2P55344 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
LIM2P55344 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.72□□□□□ -1.49
LIM2P55344 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 FUNDC2P3-201ENST00000334716 533 ntBASIC5.72□□□□□ -1.49
LIM2P55344 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
LIM2P55344 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.72□□□□□ -1.49
LIM2P55344 AC092651.1-201ENST00000426110 312 ntBASIC5.72□□□□□ -1.49
LIM2P55344 AC007679.3-201ENST00000434035 414 ntBASIC5.72□□□□□ -1.49
LIM2P55344 AL731534.1-201ENST00000434711 269 ntBASIC5.72□□□□□ -1.49
LIM2P55344 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 RPL23AP40-201ENST00000487630 390 ntBASIC5.72□□□□□ -1.49
LIM2P55344 PRMT5P1-201ENST00000514351 598 ntBASIC5.72□□□□□ -1.49
LIM2P55344 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.72□□□□□ -1.49
LIM2P55344 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.72□□□□□ -1.49
LIM2P55344 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.72□□□□□ -1.49
LIM2P55344 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.72□□□□□ -1.49
LIM2P55344 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.72□□□□□ -1.49
LIM2P55344 AC002310.3-201ENST00000569728 723 ntBASIC5.72□□□□□ -1.49
LIM2P55344 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.72□□□□□ -1.49
LIM2P55344 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.72□□□□□ -1.49
LIM2P55344 AC119403.2-201ENST00000590960 598 ntBASIC5.72□□□□□ -1.49
LIM2P55344 MIR132-201ENST00000591554 101 ntBASIC5.72□□□□□ -1.49
LIM2P55344 AP001437.1-201ENST00000608783 456 ntBASIC5.72□□□□□ -1.49
LIM2P55344 AC016252.1-201ENST00000609721 474 ntBASIC5.72□□□□□ -1.49
LIM2P55344 AC092266.1-201ENST00000610958 165 ntBASIC5.72□□□□□ -1.49
LIM2P55344 AC069234.4-201ENST00000621276 412 ntBASIC5.72□□□□□ -1.49
LIM2P55344 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
LIM2P55344 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC5.72□□□□□ -1.49
LIM2P55344 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
LIM2P55344 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
LIM2P55344 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.72□□□□□ -1.49
LIM2P55344 AC008627.1-201ENST00000517511 1704 ntBASIC5.71□□□□□ -1.49
LIM2P55344 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
LIM2P55344 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC5.71□□□□□ -1.5
LIM2P55344 AC114876.1-201ENST00000490962 1366 ntBASIC5.71□□□□□ -1.5
LIM2P55344 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.71□□□□□ -1.5
LIM2P55344 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.71□□□□□ -1.5
LIM2P55344 AC107977.1-201ENST00000355745 939 ntBASIC5.71□□□□□ -1.5
LIM2P55344 OR10R3P-201ENST00000361688 942 ntBASIC5.71□□□□□ -1.5
LIM2P55344 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
LIM2P55344 MIR130B-202ENST00000385018 82 ntBASIC5.71□□□□□ -1.5
LIM2P55344 RN7SKP166-201ENST00000410812 305 ntBASIC5.71□□□□□ -1.5
LIM2P55344 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.71□□□□□ -1.5
LIM2P55344 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.71□□□□□ -1.5
LIM2P55344 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.71□□□□□ -1.5
LIM2P55344 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.71□□□□□ -1.5
LIM2P55344 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5.71□□□□□ -1.5
LIM2P55344 AC098847.1-201ENST00000473094 348 ntBASIC5.71□□□□□ -1.5
LIM2P55344 AC124945.1-201ENST00000485133 188 ntBASIC5.71□□□□□ -1.5
LIM2P55344 RN7SL170P-201ENST00000487098 295 ntBASIC5.71□□□□□ -1.5
LIM2P55344 CCDC11P1-201ENST00000503137 1162 ntBASIC5.71□□□□□ -1.5
LIM2P55344 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC5.71□□□□□ -1.5
LIM2P55344 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.71□□□□□ -1.5
LIM2P55344 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.71□□□□□ -1.5
LIM2P55344 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.71□□□□□ -1.5
LIM2P55344 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.71□□□□□ -1.5
LIM2P55344 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.71□□□□□ -1.5
LIM2P55344 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.71□□□□□ -1.5
LIM2P55344 AC107958.1-201ENST00000556576 290 ntBASIC5.71□□□□□ -1.5
LIM2P55344 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.71□□□□□ -1.5
LIM2P55344 AC007066.2-202ENST00000566531 914 ntBASIC5.71□□□□□ -1.5
LIM2P55344 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.71□□□□□ -1.5
LIM2P55344 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.71□□□□□ -1.5
LIM2P55344 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
LIM2P55344 AL139041.1-201ENST00000605480 610 ntBASIC5.71□□□□□ -1.5
LIM2P55344 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.71□□□□□ -1.5
LIM2P55344 AC016590.3-201ENST00000611171 753 ntBASIC5.71□□□□□ -1.5
LIM2P55344 AL352984.2-202ENST00000613699 155 ntBASIC5.71□□□□□ -1.5
LIM2P55344 AC073593.1-201ENST00000624500 411 ntBASIC5.71□□□□□ -1.5
LIM2P55344 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.71□□□□□ -1.5
LIM2P55344 AC093225.1-201ENST00000506867 1408 ntBASIC5.71□□□□□ -1.5
LIM2P55344 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
LIM2P55344 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
LIM2P55344 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
LIM2P55344 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.71□□□□□ -1.5
LIM2P55344 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
LIM2P55344 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
LIM2P55344 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.7□□□□□ -1.5
LIM2P55344 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC5.7□□□□□ -1.5
LIM2P55344 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
LIM2P55344 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms