Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.76□□□□□ -1.49
SOX3P41225 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.76□□□□□ -1.49
SOX3P41225 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX3P41225 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC5.76□□□□□ -1.49
SOX3P41225 AC091167.5-201ENST00000605689 894 ntBASIC5.76□□□□□ -1.49
SOX3P41225 AC006924.1-201ENST00000610750 559 ntBASIC5.76□□□□□ -1.49
SOX3P41225 AC022106.1-201ENST00000612834 766 ntBASIC5.76□□□□□ -1.49
SOX3P41225 AC022726.2-201ENST00000634673 547 ntBASIC5.76□□□□□ -1.49
SOX3P41225 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX3P41225 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX3P41225 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
SOX3P41225 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX3P41225 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SOX3P41225 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SOX3P41225 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SOX3P41225 AC104966.1-201ENST00000467010 1464 ntBASIC5.76□□□□□ -1.49
SOX3P41225 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX3P41225 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SOX3P41225 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.75□□□□□ -1.49
SOX3P41225 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.75□□□□□ -1.49
SOX3P41225 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX3P41225 AC022164.1-201ENST00000568767 2673 ntBASIC5.75□□□□□ -1.49
SOX3P41225 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SOX3P41225 AC089998.1-201ENST00000548575 3141 ntBASIC5.75□□□□□ -1.49
SOX3P41225 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX3P41225 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SOX3P41225 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.75□□□□□ -1.49
SOX3P41225 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SOX3P41225 RNU1-49P-201ENST00000363468 159 ntBASIC5.75□□□□□ -1.49
SOX3P41225 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SOX3P41225 OR7E156P-201ENST00000400303 464 ntBASIC5.75□□□□□ -1.49
SOX3P41225 AL445238.1-204ENST00000400311 463 ntBASIC5.75□□□□□ -1.49
SOX3P41225 RPL23AP17-201ENST00000401064 499 ntBASIC5.75□□□□□ -1.49
SOX3P41225 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX3P41225 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.75□□□□□ -1.49
SOX3P41225 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX3P41225 MRPS21P3-201ENST00000436696 262 ntBASIC5.75□□□□□ -1.49
SOX3P41225 PPIAP10-201ENST00000438675 458 ntBASIC5.75□□□□□ -1.49
SOX3P41225 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX3P41225 AC114728.1-201ENST00000488289 483 ntBASIC5.75□□□□□ -1.49
SOX3P41225 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.75□□□□□ -1.49
SOX3P41225 OR7E99P-201ENST00000505750 922 ntBASIC5.75□□□□□ -1.49
SOX3P41225 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX3P41225 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC5.75□□□□□ -1.49
SOX3P41225 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX3P41225 AC009879.1-201ENST00000520029 839 ntBASIC5.75□□□□□ -1.49
SOX3P41225 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX3P41225 AC005363.1-201ENST00000530779 351 ntBASIC5.75□□□□□ -1.49
SOX3P41225 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX3P41225 AP001858.2-201ENST00000536213 601 ntBASIC5.75□□□□□ -1.49
SOX3P41225 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.75□□□□□ -1.49
SOX3P41225 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.75□□□□□ -1.49
SOX3P41225 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.75□□□□□ -1.49
SOX3P41225 AL591167.1-201ENST00000607321 456 ntBASIC5.75□□□□□ -1.49
SOX3P41225 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.75□□□□□ -1.49
SOX3P41225 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.75□□□□□ -1.49
SOX3P41225 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.75□□□□□ -1.49
SOX3P41225 AC138627.1-204ENST00000641894 765 ntBASIC5.75□□□□□ -1.49
SOX3P41225 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
SOX3P41225 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SOX3P41225 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.75□□□□□ -1.49
SOX3P41225 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SOX3P41225 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.75□□□□□ -1.49
SOX3P41225 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SOX3P41225 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX3P41225 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.75□□□□□ -1.49
SOX3P41225 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.75□□□□□ -1.49
SOX3P41225 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.75□□□□□ -1.49
SOX3P41225 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SOX3P41225 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.75□□□□□ -1.49
SOX3P41225 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.75□□□□□ -1.49
SOX3P41225 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.75□□□□□ -1.49
SOX3P41225 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SOX3P41225 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SOX3P41225 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SOX3P41225 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 AL359955.1-201ENST00000455242 3275 ntBASIC5.74□□□□□ -1.49
SOX3P41225 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
SOX3P41225 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SOX3P41225 RNA5SP110-201ENST00000362638 115 ntBASIC5.74□□□□□ -1.49
SOX3P41225 GNG5P2-201ENST00000372054 207 ntBASIC5.74□□□□□ -1.49
SOX3P41225 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
SOX3P41225 RPS20P25-201ENST00000412447 352 ntBASIC5.74□□□□□ -1.49
SOX3P41225 AC007562.1-201ENST00000421819 517 ntBASIC5.74□□□□□ -1.49
SOX3P41225 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.74□□□□□ -1.49
SOX3P41225 AC021876.1-201ENST00000425959 359 ntBASIC5.74□□□□□ -1.49
SOX3P41225 YY1P1-201ENST00000427625 668 ntBASIC5.74□□□□□ -1.49
SOX3P41225 AC002069.1-201ENST00000429649 1159 ntBASIC5.74□□□□□ -1.49
SOX3P41225 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.74□□□□□ -1.49
SOX3P41225 AMYP1-201ENST00000440059 1023 ntBASIC5.74□□□□□ -1.49
SOX3P41225 AC079922.1-201ENST00000443291 359 ntBASIC5.74□□□□□ -1.49
SOX3P41225 AC023274.2-201ENST00000445264 521 ntBASIC5.74□□□□□ -1.49
SOX3P41225 KRTAP2-5P-201ENST00000446109 396 ntBASIC5.74□□□□□ -1.49
SOX3P41225 RPL5P16-201ENST00000471467 790 ntBASIC5.74□□□□□ -1.49
SOX3P41225 AC128716.1-201ENST00000475129 166 ntBASIC5.74□□□□□ -1.49
SOX3P41225 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.74□□□□□ -1.49
SOX3P41225 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.74□□□□□ -1.49
SOX3P41225 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.74□□□□□ -1.49
SOX3P41225 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms