Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
CIITAP33076 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.9□□□□□ -1.3
CIITAP33076 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.9□□□□□ -1.3
CIITAP33076 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.9□□□□□ -1.3
CIITAP33076 OR7E156P-201ENST00000400303 464 ntBASIC6.9□□□□□ -1.3
CIITAP33076 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.9□□□□□ -1.3
CIITAP33076 RN7SKP151-201ENST00000410230 316 ntBASIC6.9□□□□□ -1.3
CIITAP33076 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.9□□□□□ -1.3
CIITAP33076 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.9□□□□□ -1.3
CIITAP33076 RPL12P12-201ENST00000424633 501 ntBASIC6.9□□□□□ -1.3
CIITAP33076 NPM1P25-201ENST00000429734 854 ntBASIC6.9□□□□□ -1.3
CIITAP33076 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.9□□□□□ -1.3
CIITAP33076 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.9□□□□□ -1.3
CIITAP33076 CFL1P4-201ENST00000451536 498 ntBASIC6.9□□□□□ -1.3
CIITAP33076 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.3
CIITAP33076 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC6.9□□□□□ -1.3
CIITAP33076 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
CIITAP33076 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC6.9□□□□□ -1.3
CIITAP33076 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.9□□□□□ -1.3
CIITAP33076 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.9□□□□□ -1.3
CIITAP33076 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC6.9□□□□□ -1.3
CIITAP33076 AC027334.1-201ENST00000603257 310 ntBASIC6.9□□□□□ -1.3
CIITAP33076 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.9□□□□□ -1.3
CIITAP33076 AP003789.1-201ENST00000617737 605 ntBASIC6.9□□□□□ -1.3
CIITAP33076 AP003072.5-201ENST00000623872 773 ntBASIC6.9□□□□□ -1.3
CIITAP33076 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.9□□□□□ -1.3
CIITAP33076 MIR1910-201ENST00000636955 80 ntBASIC6.9□□□□□ -1.3
CIITAP33076 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
CIITAP33076 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
CIITAP33076 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
CIITAP33076 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.31
CIITAP33076 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
CIITAP33076 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
CIITAP33076 OLMALINC-203ENST00000641087 3779 ntBASIC6.9□□□□□ -1.31
CIITAP33076 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.31
CIITAP33076 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.31
CIITAP33076 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.9□□□□□ -1.31
CIITAP33076 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.9□□□□□ -1.31
CIITAP33076 AL137058.3-201ENST00000624531 3099 ntBASIC6.9□□□□□ -1.31
CIITAP33076 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.89□□□□□ -1.31
CIITAP33076 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.89□□□□□ -1.31
CIITAP33076 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC6.89□□□□□ -1.31
CIITAP33076 LCN1P2-201ENST00000372030 223 ntBASIC6.89□□□□□ -1.31
CIITAP33076 TRAV35-201ENST00000390462 330 ntBASIC6.89□□□□□ -1.31
CIITAP33076 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 ZNF736P10Y-201ENST00000403990 1110 ntBASIC6.89□□□□□ -1.31
CIITAP33076 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6.89□□□□□ -1.31
CIITAP33076 RPL35AP3-201ENST00000414680 288 ntBASIC6.89□□□□□ -1.31
CIITAP33076 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC6.89□□□□□ -1.31
CIITAP33076 RPS7P8-201ENST00000418311 581 ntBASIC6.89□□□□□ -1.31
CIITAP33076 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC6.89□□□□□ -1.31
CIITAP33076 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.89□□□□□ -1.31
CIITAP33076 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 RPL5P12-201ENST00000477071 851 ntBASIC6.89□□□□□ -1.31
CIITAP33076 RPL17P2-201ENST00000491913 451 ntBASIC6.89□□□□□ -1.31
CIITAP33076 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
CIITAP33076 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC6.89□□□□□ -1.31
CIITAP33076 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.89□□□□□ -1.31
CIITAP33076 RPA2P1-201ENST00000556557 721 ntBASIC6.89□□□□□ -1.31
CIITAP33076 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC6.89□□□□□ -1.31
CIITAP33076 AC090651.1-201ENST00000567865 634 ntBASIC6.89□□□□□ -1.31
CIITAP33076 AC090826.1-203ENST00000569235 490 ntBASIC6.89□□□□□ -1.31
CIITAP33076 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC6.89□□□□□ -1.31
CIITAP33076 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 MIR6071-201ENST00000616741 78 ntBASIC6.89□□□□□ -1.31
CIITAP33076 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.89□□□□□ -1.31
CIITAP33076 MTCO1P8-201ENST00000416914 1523 ntBASIC6.89□□□□□ -1.31
CIITAP33076 MTCO1P28-201ENST00000574177 1528 ntBASIC6.89□□□□□ -1.31
CIITAP33076 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.89□□□□□ -1.31
CIITAP33076 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
CIITAP33076 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.89□□□□□ -1.31
CIITAP33076 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.89□□□□□ -1.31
CIITAP33076 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.89□□□□□ -1.31
CIITAP33076 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
CIITAP33076 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
CIITAP33076 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.88□□□□□ -1.31
CIITAP33076 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.88□□□□□ -1.31
CIITAP33076 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CIITAP33076 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.88□□□□□ -1.31
CIITAP33076 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CIITAP33076 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CIITAP33076 QRSL1P1-201ENST00000400977 1540 ntBASIC6.88□□□□□ -1.31
CIITAP33076 PSG10P-201ENST00000501199 1500 ntBASIC6.88□□□□□ -1.31
CIITAP33076 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.88□□□□□ -1.31
CIITAP33076 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC6.88□□□□□ -1.31
CIITAP33076 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CIITAP33076 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms