Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC7.9□□□□□ -1.14
HOXC9P31274 LRRC37A14P-201ENST00000452297 462 ntBASIC7.9□□□□□ -1.14
HOXC9P31274 RN7SL165P-201ENST00000477476 291 ntBASIC7.9□□□□□ -1.14
HOXC9P31274 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC7.9□□□□□ -1.14
HOXC9P31274 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC7.9□□□□□ -1.14
HOXC9P31274 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.14
HOXC9P31274 AC027026.1-201ENST00000532323 742 ntBASIC7.9□□□□□ -1.14
HOXC9P31274 AC145423.1-201ENST00000605712 336 ntBASIC7.9□□□□□ -1.14
HOXC9P31274 AL691477.1-201ENST00000624398 162 ntBASIC7.9□□□□□ -1.14
HOXC9P31274 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.14
HOXC9P31274 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
HOXC9P31274 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
HOXC9P31274 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC7.9□□□□□ -1.15
HOXC9P31274 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
HOXC9P31274 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
HOXC9P31274 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC7.9□□□□□ -1.15
HOXC9P31274 EIF3EP2-201ENST00000423042 1814 ntBASIC7.89□□□□□ -1.15
HOXC9P31274 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC7.89□□□□□ -1.15
HOXC9P31274 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC7.89□□□□□ -1.15
HOXC9P31274 FGG-205ENST00000407946 1636 ntTSL 5 BASIC7.89□□□□□ -1.15
HOXC9P31274 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC7.89□□□□□ -1.15
HOXC9P31274 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
HOXC9P31274 KCNJ15-220ENST00000612702 3046 ntAPPRIS P1 TSL 4 BASIC7.89□□□□□ -1.15
HOXC9P31274 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HOXC9P31274 PARN-201ENST00000341484 2100 ntTSL 2 BASIC7.89□□□□□ -1.15
HOXC9P31274 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HOXC9P31274 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC7.89□□□□□ -1.15
HOXC9P31274 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC7.89□□□□□ -1.15
HOXC9P31274 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC7.89□□□□□ -1.15
HOXC9P31274 AL022319.1-201ENST00000458183 1167 ntBASIC7.89□□□□□ -1.15
HOXC9P31274 KATNBL1P4-201ENST00000503545 918 ntBASIC7.89□□□□□ -1.15
HOXC9P31274 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC7.89□□□□□ -1.15
HOXC9P31274 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC7.89□□□□□ -1.15
HOXC9P31274 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC7.89□□□□□ -1.15
HOXC9P31274 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC7.89□□□□□ -1.15
HOXC9P31274 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC7.89□□□□□ -1.15
HOXC9P31274 AC007494.1-201ENST00000562293 760 ntBASIC7.89□□□□□ -1.15
HOXC9P31274 AC016180.1-201ENST00000567945 403 ntBASIC7.89□□□□□ -1.15
HOXC9P31274 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC7.89□□□□□ -1.15
HOXC9P31274 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC7.89□□□□□ -1.15
HOXC9P31274 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC7.89□□□□□ -1.15
HOXC9P31274 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC7.89□□□□□ -1.15
HOXC9P31274 OR7A1P-201ENST00000601206 970 ntBASIC7.89□□□□□ -1.15
HOXC9P31274 AL139099.4-201ENST00000614802 114 ntBASIC7.89□□□□□ -1.15
HOXC9P31274 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC7.89□□□□□ -1.15
HOXC9P31274 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.15
HOXC9P31274 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HOXC9P31274 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
HOXC9P31274 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC7.88□□□□□ -1.15
HOXC9P31274 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
HOXC9P31274 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC7.88□□□□□ -1.15
HOXC9P31274 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC7.88□□□□□ -1.15
HOXC9P31274 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
HOXC9P31274 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
HOXC9P31274 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
HOXC9P31274 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
HOXC9P31274 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
HOXC9P31274 AC119674.1-213ENST00000641177 1386 ntBASIC7.88□□□□□ -1.15
HOXC9P31274 POT1-202ENST00000393329 3950 ntTSL 5 BASIC7.88□□□□□ -1.15
HOXC9P31274 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
HOXC9P31274 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
HOXC9P31274 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC7.88□□□□□ -1.15
HOXC9P31274 RN7SKP162-201ENST00000363605 345 ntBASIC7.88□□□□□ -1.15
HOXC9P31274 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC7.88□□□□□ -1.15
HOXC9P31274 Z84478.1-201ENST00000438230 1219 ntBASIC7.88□□□□□ -1.15
HOXC9P31274 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.88□□□□□ -1.15
HOXC9P31274 UBE2V2P4-201ENST00000447495 259 ntBASIC7.88□□□□□ -1.15
HOXC9P31274 RAB28P2-201ENST00000454299 641 ntBASIC7.88□□□□□ -1.15
HOXC9P31274 RN7SL352P-201ENST00000466002 277 ntBASIC7.88□□□□□ -1.15
HOXC9P31274 RPL23AP40-201ENST00000487630 390 ntBASIC7.88□□□□□ -1.15
HOXC9P31274 CCDC11P1-201ENST00000503137 1162 ntBASIC7.88□□□□□ -1.15
HOXC9P31274 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC7.88□□□□□ -1.15
HOXC9P31274 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC7.88□□□□□ -1.15
HOXC9P31274 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC7.88□□□□□ -1.15
HOXC9P31274 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC7.88□□□□□ -1.15
HOXC9P31274 HCG18-243ENST00000602498 327 ntTSL 3 BASIC7.88□□□□□ -1.15
HOXC9P31274 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC7.88□□□□□ -1.15
HOXC9P31274 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC7.88□□□□□ -1.15
HOXC9P31274 HOTTIP_3.1-201ENST00000619957 337 ntBASIC7.88□□□□□ -1.15
HOXC9P31274 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC7.88□□□□□ -1.15
HOXC9P31274 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
HOXC9P31274 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
HOXC9P31274 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
HOXC9P31274 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
HOXC9P31274 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC7.88□□□□□ -1.15
HOXC9P31274 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
HOXC9P31274 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
HOXC9P31274 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
HOXC9P31274 FO393409.1-201ENST00000399325 1372 ntBASIC7.87□□□□□ -1.15
HOXC9P31274 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
HOXC9P31274 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
HOXC9P31274 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC7.87□□□□□ -1.15
HOXC9P31274 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
HOXC9P31274 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.15
HOXC9P31274 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC7.87□□□□□ -1.15
HOXC9P31274 AC007842.1-201ENST00000597336 2039 ntBASIC7.87□□□□□ -1.15
HOXC9P31274 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC7.87□□□□□ -1.15
HOXC9P31274 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC7.87□□□□□ -1.15
HOXC9P31274 NME1P1-201ENST00000420914 382 ntBASIC7.87□□□□□ -1.15
HOXC9P31274 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC7.87□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 156.9 ms