Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC063977.5-201ENST00000601044 974 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 AC126915.2-201ENST00000610957 190 ntBASIC7.32□□□□□ -1.24
COL5A3P25940 ILDR2-201ENST00000271417 13140 ntAPPRIS P2 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL5A3P25940 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC7.32□□□□□ -1.24
COL5A3P25940 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL5A3P25940 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL5A3P25940 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 AC137056.2-201ENST00000624055 1958 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
COL5A3P25940 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
COL5A3P25940 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.31□□□□□ -1.24
COL5A3P25940 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC7.31□□□□□ -1.24
COL5A3P25940 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC7.31□□□□□ -1.24
COL5A3P25940 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC7.31□□□□□ -1.24
COL5A3P25940 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC7.31□□□□□ -1.24
COL5A3P25940 RNA5SP333-201ENST00000363466 118 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 RNA5SP334-201ENST00000364825 118 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC7.31□□□□□ -1.24
COL5A3P25940 GAPDHP42-201ENST00000406848 981 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC7.31□□□□□ -1.24
COL5A3P25940 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 RPS27P18-201ENST00000431701 247 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC7.31□□□□□ -1.24
COL5A3P25940 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC7.31□□□□□ -1.24
COL5A3P25940 RPL7AP6-201ENST00000477943 801 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 AC068522.1-201ENST00000482895 345 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 RN7SL30P-201ENST00000488416 306 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC7.31□□□□□ -1.24
COL5A3P25940 RPS23P1-201ENST00000491662 432 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 RN7SL808P-201ENST00000496066 299 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 CCDC11P1-201ENST00000503137 1162 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC7.31□□□□□ -1.24
COL5A3P25940 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
COL5A3P25940 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC7.31□□□□□ -1.24
COL5A3P25940 AC004825.1-201ENST00000555068 586 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC7.31□□□□□ -1.24
COL5A3P25940 AC106730.2-201ENST00000566641 540 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC7.31□□□□□ -1.24
COL5A3P25940 AC000068.2-201ENST00000608816 460 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 AC025574.2-201ENST00000615621 514 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC7.31□□□□□ -1.24
COL5A3P25940 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
COL5A3P25940 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC7.31□□□□□ -1.24
COL5A3P25940 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
COL5A3P25940 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC7.31□□□□□ -1.24
COL5A3P25940 AL353763.1-201ENST00000624467 1628 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 IMMTP1-201ENST00000435590 2219 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 AC008957.3-201ENST00000624112 2242 ntBASIC7.31□□□□□ -1.24
COL5A3P25940 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC7.31□□□□□ -1.24
COL5A3P25940 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL5A3P25940 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
COL5A3P25940 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC7.3□□□□□ -1.24
COL5A3P25940 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
COL5A3P25940 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC7.3□□□□□ -1.24
COL5A3P25940 RNA5SP443-201ENST00000363083 132 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL5A3P25940 H2AFZP6-201ENST00000444403 394 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC7.3□□□□□ -1.24
COL5A3P25940 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC7.3□□□□□ -1.24
COL5A3P25940 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC7.3□□□□□ -1.24
COL5A3P25940 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC7.3□□□□□ -1.24
COL5A3P25940 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC7.3□□□□□ -1.24
COL5A3P25940 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC7.3□□□□□ -1.24
COL5A3P25940 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC7.3□□□□□ -1.24
COL5A3P25940 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC7.3□□□□□ -1.24
COL5A3P25940 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC7.3□□□□□ -1.24
COL5A3P25940 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC7.3□□□□□ -1.24
COL5A3P25940 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC7.3□□□□□ -1.24
COL5A3P25940 AP002505.2-201ENST00000623585 696 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 AL139805.2-201ENST00000455305 2433 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL5A3P25940 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
COL5A3P25940 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL5A3P25940 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
COL5A3P25940 USP9YP3-201ENST00000434481 1766 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
COL5A3P25940 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC7.3□□□□□ -1.24
COL5A3P25940 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
COL5A3P25940 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC7.3□□□□□ -1.24
COL5A3P25940 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
COL5A3P25940 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC7.3□□□□□ -1.24
COL5A3P25940 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL5A3P25940 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
COL5A3P25940 GAPDHP24-201ENST00000328713 983 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 RNU1-77P-201ENST00000390868 162 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 ACA64.4-201ENST00000459070 127 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC7.3□□□□□ -1.24
COL5A3P25940 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
COL5A3P25940 AC105384.2-201ENST00000508433 640 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 CYP4F27P-201ENST00000514557 494 ntBASIC7.3□□□□□ -1.24
COL5A3P25940 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC7.3□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms