Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC7.28□□□□□ -1.24
COL6A1P12109 RNA5SP271-201ENST00000516700 88 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC7.28□□□□□ -1.24
COL6A1P12109 AC008429.2-201ENST00000523057 864 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC7.28□□□□□ -1.24
COL6A1P12109 LRRC34P1-201ENST00000542742 915 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AC139697.1-201ENST00000548429 745 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC7.28□□□□□ -1.24
COL6A1P12109 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 AC092332.1-201ENST00000563684 829 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 RN7SL404P-201ENST00000582421 281 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AC013244.1-201ENST00000604279 193 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 ELOCP35-201ENST00000604289 336 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AL451086.1-201ENST00000605596 223 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC7.28□□□□□ -1.24
COL6A1P12109 AC126175.1-201ENST00000617041 758 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 TMEM30CP-203ENST00000637814 1035 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
COL6A1P12109 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC7.28□□□□□ -1.24
COL6A1P12109 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC7.28□□□□□ -1.24
COL6A1P12109 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
COL6A1P12109 UGT2B25P-201ENST00000511504 1586 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 AP003119.3-201ENST00000566747 4192 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC7.28□□□□□ -1.24
COL6A1P12109 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC7.28□□□□□ -1.24
COL6A1P12109 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC7.28□□□□□ -1.24
COL6A1P12109 CUL4AP1-201ENST00000514750 1863 ntBASIC7.28□□□□□ -1.24
COL6A1P12109 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
COL6A1P12109 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.24
COL6A1P12109 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC7.27□□□□□ -1.24
COL6A1P12109 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.24
COL6A1P12109 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.24
COL6A1P12109 GLYATL1P1-201ENST00000528297 1607 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
COL6A1P12109 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
COL6A1P12109 AP003175.1-201ENST00000641383 6658 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 AL034417.4-202ENST00000642135 2236 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC7.27□□□□□ -1.25
COL6A1P12109 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 AC079949.2-201ENST00000617117 2933 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
COL6A1P12109 SLC14A2-203ENST00000586448 3540 ntAPPRIS P1 TSL 2 BASIC7.27□□□□□ -1.25
COL6A1P12109 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
COL6A1P12109 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
COL6A1P12109 MIR323A-201ENST00000362199 86 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 Y_RNA.62-201ENST00000362840 99 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 RNU6-1000P-201ENST00000391066 106 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 RPL9P21-201ENST00000392269 505 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 ANAPC10P1-201ENST00000395991 556 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 RPL5P20-201ENST00000403848 896 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 RN7SKP271-201ENST00000410528 320 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 RNU6-564P-201ENST00000410983 104 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 MARK2P12-201ENST00000420129 585 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC7.27□□□□□ -1.25
COL6A1P12109 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 GAPDHP48-201ENST00000436626 961 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 ATP6V1E1P1-201ENST00000439215 681 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 AL161636.2-201ENST00000445179 927 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 AC009963.4-201ENST00000448535 339 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC7.27□□□□□ -1.25
COL6A1P12109 DUXAP8-207ENST00000456786 622 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC7.27□□□□□ -1.25
COL6A1P12109 RN7SL382P-201ENST00000482631 282 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 AC124945.1-201ENST00000485133 188 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC7.27□□□□□ -1.25
COL6A1P12109 AC008638.1-201ENST00000506035 866 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC7.27□□□□□ -1.25
COL6A1P12109 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC7.27□□□□□ -1.25
COL6A1P12109 OR10D4P-201ENST00000525892 951 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC7.27□□□□□ -1.25
COL6A1P12109 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC7.27□□□□□ -1.25
COL6A1P12109 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC7.27□□□□□ -1.25
COL6A1P12109 DUXAP10-204ENST00000612052 616 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 AP001264.1-201ENST00000620602 703 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 AC004808.1-201ENST00000627671 721 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
COL6A1P12109 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
COL6A1P12109 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
COL6A1P12109 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC7.27□□□□□ -1.25
COL6A1P12109 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.27□□□□□ -1.25
COL6A1P12109 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC7.27□□□□□ -1.25
COL6A1P12109 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL6A1P12109 AC027575.3-201ENST00000583058 2747 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC7.27□□□□□ -1.25
COL6A1P12109 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC7.27□□□□□ -1.25
COL6A1P12109 AC092111.2-201ENST00000611627 1414 ntBASIC7.27□□□□□ -1.25
COL6A1P12109 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC7.27□□□□□ -1.25
COL6A1P12109 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms