Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC7.76□□□□□ -1.17
COL3A1P02461 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC7.76□□□□□ -1.17
COL3A1P02461 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC7.76□□□□□ -1.17
COL3A1P02461 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 RPL32P33-201ENST00000487023 394 ntBASIC7.76□□□□□ -1.17
COL3A1P02461 AC002456.2-201ENST00000509356 380 ntBASIC7.76□□□□□ -1.17
COL3A1P02461 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC7.76□□□□□ -1.17
COL3A1P02461 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC7.76□□□□□ -1.17
COL3A1P02461 MRPS16P1-201ENST00000523462 412 ntBASIC7.76□□□□□ -1.17
COL3A1P02461 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC7.76□□□□□ -1.17
COL3A1P02461 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC7.76□□□□□ -1.17
COL3A1P02461 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC7.76□□□□□ -1.17
COL3A1P02461 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC7.76□□□□□ -1.17
COL3A1P02461 AC126175.1-201ENST00000617041 758 ntBASIC7.76□□□□□ -1.17
COL3A1P02461 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
COL3A1P02461 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC7.76□□□□□ -1.17
COL3A1P02461 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC7.76□□□□□ -1.17
COL3A1P02461 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC7.76□□□□□ -1.17
COL3A1P02461 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
COL3A1P02461 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC7.76□□□□□ -1.17
COL3A1P02461 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
COL3A1P02461 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
COL3A1P02461 MFSD8-219ENST00000641228 2559 ntBASIC7.76□□□□□ -1.17
COL3A1P02461 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 RNA5SP234-201ENST00000363916 119 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC7.75□□□□□ -1.17
COL3A1P02461 EEF1B2P8-201ENST00000414101 671 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 NENFP1-201ENST00000419476 466 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC7.75□□□□□ -1.17
COL3A1P02461 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC7.75□□□□□ -1.17
COL3A1P02461 AC064862.4-201ENST00000442180 334 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC7.75□□□□□ -1.17
COL3A1P02461 RPL7P51-201ENST00000490532 749 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 KATNBL1P4-201ENST00000503545 918 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC7.75□□□□□ -1.17
COL3A1P02461 AC105384.2-201ENST00000508433 640 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 AC138866.2-201ENST00000508650 584 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 AC079791.1-201ENST00000605356 973 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC7.75□□□□□ -1.17
COL3A1P02461 CD109-203ENST00000437994 9401 ntAPPRIS ALT1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 MFSD8-239ENST00000641590 2479 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 AL117378.2-201ENST00000622916 1337 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC7.75□□□□□ -1.17
COL3A1P02461 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC7.75□□□□□ -1.17
COL3A1P02461 AL008638.3-201ENST00000623027 5182 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC7.75□□□□□ -1.17
COL3A1P02461 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC7.75□□□□□ -1.17
COL3A1P02461 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
COL3A1P02461 CPS1-IT1-201ENST00000628368 2306 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC7.75□□□□□ -1.17
COL3A1P02461 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 RNU1-59P-201ENST00000364829 162 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL3A1P02461 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC7.75□□□□□ -1.17
COL3A1P02461 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC7.75□□□□□ -1.17
COL3A1P02461 AC023141.9-201ENST00000458734 412 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 RN7SL174P-201ENST00000475578 289 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 MTATP6P1-201ENST00000514057 681 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 TEK-204ENST00000519097 3836 ntTSL 2 BASIC7.75□□□□□ -1.17
COL3A1P02461 AC096996.1-201ENST00000563813 325 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC7.75□□□□□ -1.17
COL3A1P02461 U1.25-201ENST00000614085 162 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 U1.34-201ENST00000618578 162 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 U1.31-201ENST00000620022 160 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 AC026124.2-201ENST00000621847 656 ntBASIC7.75□□□□□ -1.17
COL3A1P02461 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL3A1P02461 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL3A1P02461 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL3A1P02461 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC7.74□□□□□ -1.17
COL3A1P02461 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL3A1P02461 SCN9A-203ENST00000409672 9768 ntAPPRIS P2 TSL 5 BASIC7.74□□□□□ -1.17
COL3A1P02461 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC7.74□□□□□ -1.17
COL3A1P02461 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
COL3A1P02461 ST7-203ENST00000393443 2360 ntTSL 2 BASIC7.74□□□□□ -1.17
COL3A1P02461 WDR95P-201ENST00000425638 1542 ntBASIC7.74□□□□□ -1.17
COL3A1P02461 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL3A1P02461 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
COL3A1P02461 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC7.74□□□□□ -1.17
COL3A1P02461 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC7.74□□□□□ -1.17
COL3A1P02461 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL3A1P02461 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL3A1P02461 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC7.74□□□□□ -1.17
COL3A1P02461 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC7.74□□□□□ -1.17
COL3A1P02461 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
COL3A1P02461 NME1P1-201ENST00000420914 382 ntBASIC7.74□□□□□ -1.17
COL3A1P02461 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC7.74□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms