Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 IGKV1OR22-1-201ENST00000521497 360 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AP003396.4-201ENST00000527574 265 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC007956.1-201ENST00000555623 542 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC068768.2-201ENST00000602352 343 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AL008723.3-201ENST00000608926 449 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC010998.3-201ENST00000613871 631 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 ZNF658B-201ENST00000602828 3408 ntBASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC3Q9BQI4 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 SNORA21-201ENST00000362423 132 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 RNU1-134P-201ENST00000362935 165 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 RN7SKP69-201ENST00000365390 305 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 RNU6-167P-201ENST00000384292 106 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AL031985.1-201ENST00000392713 418 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 UBE2V1P14-201ENST00000415815 558 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 NFYAP1-201ENST00000431953 972 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AL451136.1-201ENST00000435399 325 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 VN1R96P-201ENST00000446052 858 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 MTND4LP12-201ENST00000448237 295 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 VPS25P1-201ENST00000455691 508 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 CST12P-201ENST00000457644 362 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC090958.1-201ENST00000511122 351 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 MTATP6P1-201ENST00000514057 681 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 CR383658.1-201ENST00000514609 734 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC067852.5-201ENST00000589299 310 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC022106.1-201ENST00000612834 766 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC245014.3-201ENST00000618589 347 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 TET1P1-201ENST00000426627 2301 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 AC091305.2-201ENST00000624049 1576 ntBASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CCDC3Q9BQI4 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 CAST-202ENST00000325674 3356 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC005618.1-201ENST00000606901 3148 ntBASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 PABPC1P8-201ENST00000452851 2086 ntBASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AL132875.1-201ENST00000403623 949 ntBASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 RN7SKP206-201ENST00000410823 293 ntBASIC6.04□□□□□ -1.44
CCDC3Q9BQI4 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms