Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 NPM1P5-201ENST00000557228 838 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 HMGN1P26-201ENST00000558737 303 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 RNU4ATAC-201ENST00000580972 127 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 MIR132-201ENST00000591554 101 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 AC069234.4-201ENST00000621276 412 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 AL133243.2-201ENST00000610331 1621 ntBASIC6.16□□□□□ -1.42
VPS39Q96JC1 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.16□□□□□ -1.42
VPS39Q96JC1 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
VPS39Q96JC1 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 GNG5P2-201ENST00000372054 207 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 AL096800.1-201ENST00000405326 893 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 OR2W4P-201ENST00000406496 926 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 DPPA2P2-201ENST00000418220 897 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AL731534.1-201ENST00000434711 269 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 PPIAP10-201ENST00000438675 458 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 OR2L9P-201ENST00000444456 913 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 RN7SL352P-201ENST00000466002 277 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC015524.1-201ENST00000491585 472 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
VPS39Q96JC1 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC135983.3-201ENST00000528049 1226 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC025283.1-201ENST00000572039 734 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 AC024267.2-201ENST00000582737 417 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.15□□□□□ -1.42
VPS39Q96JC1 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.42
VPS39Q96JC1 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.15□□□□□ -1.43
VPS39Q96JC1 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.15□□□□□ -1.43
VPS39Q96JC1 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC6.15□□□□□ -1.43
VPS39Q96JC1 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.15□□□□□ -1.43
VPS39Q96JC1 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
VPS39Q96JC1 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
VPS39Q96JC1 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.15□□□□□ -1.43
VPS39Q96JC1 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.43
VPS39Q96JC1 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.43
VPS39Q96JC1 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
VPS39Q96JC1 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 RNA5SP346-201ENST00000363541 121 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
VPS39Q96JC1 SMC4P1-201ENST00000414479 527 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 REREP1Y-201ENST00000422655 198 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 OSTCP4-201ENST00000424397 449 ntBASIC6.14□□□□□ -1.43
VPS39Q96JC1 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms