Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX2P35548 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX2P35548 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX2P35548 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
MSX2P35548 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
MSX2P35548 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX2P35548 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX2P35548 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.36□□□□□ -1.39
MSX2P35548 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX2P35548 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX2P35548 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX2P35548 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX2P35548 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX2P35548 TTC41P-205ENST00000551270 3963 ntBASIC6.35□□□□□ -1.39
MSX2P35548 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.35□□□□□ -1.39
MSX2P35548 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.35□□□□□ -1.39
MSX2P35548 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 GPR33-201ENST00000399285 1343 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
MSX2P35548 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
MSX2P35548 TTR-201ENST00000237014 957 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 PRAC1-201ENST00000290294 386 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 AHSP-201ENST00000302312 524 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 OR5H2-201ENST00000355273 945 ntBASIC6.35□□□□□ -1.39
MSX2P35548 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
MSX2P35548 MIR421-201ENST00000365696 85 ntBASIC6.35□□□□□ -1.39
MSX2P35548 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 AL355615.1-201ENST00000406187 641 ntBASIC6.35□□□□□ -1.39
MSX2P35548 RN7SKP182-201ENST00000410772 298 ntBASIC6.35□□□□□ -1.39
MSX2P35548 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.35□□□□□ -1.39
MSX2P35548 MTND4P22-201ENST00000413116 1169 ntBASIC6.35□□□□□ -1.39
MSX2P35548 MTND2P18-201ENST00000419962 1030 ntBASIC6.35□□□□□ -1.39
MSX2P35548 ARL2BPP3-201ENST00000421226 480 ntBASIC6.35□□□□□ -1.39
MSX2P35548 AC239367.3-201ENST00000428996 814 ntBASIC6.35□□□□□ -1.39
MSX2P35548 MTND1P20-201ENST00000430341 950 ntBASIC6.35□□□□□ -1.39
MSX2P35548 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 MUPP-201ENST00000438111 566 ntBASIC6.35□□□□□ -1.39
MSX2P35548 OR10R1P-201ENST00000441524 1141 ntBASIC6.35□□□□□ -1.39
MSX2P35548 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX2P35548 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX2P35548 MEF2AP1-201ENST00000454867 863 ntBASIC6.35□□□□□ -1.39
MSX2P35548 RARRES2P3-201ENST00000457739 473 ntBASIC6.35□□□□□ -1.39
MSX2P35548 NAP1L1P3-201ENST00000462291 880 ntBASIC6.35□□□□□ -1.39
MSX2P35548 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.35□□□□□ -1.39
MSX2P35548 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 LALBA-202ENST00000549817 1243 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX2P35548 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX2P35548 PCAT29-202ENST00000558941 545 ntTSL 4 BASIC6.35□□□□□ -1.39
MSX2P35548 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.35□□□□□ -1.39
MSX2P35548 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX2P35548 STARD6-202ENST00000577499 696 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX2P35548 BOLA2P1-201ENST00000584794 232 ntBASIC6.35□□□□□ -1.39
MSX2P35548 AC061975.8-201ENST00000587058 721 ntBASIC6.35□□□□□ -1.39
MSX2P35548 MIMT1-201ENST00000597105 1050 ntBASIC6.35□□□□□ -1.39
MSX2P35548 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX2P35548 AL078623.1-201ENST00000602702 907 ntBASIC6.35□□□□□ -1.39
MSX2P35548 AC004908.1-201ENST00000606572 541 ntBASIC6.35□□□□□ -1.39
MSX2P35548 AC244669.1-201ENST00000616141 715 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 MIR1264-201ENST00000616374 69 ntBASIC6.35□□□□□ -1.39
MSX2P35548 CXADRP3-202ENST00000617265 1100 ntBASIC6.35□□□□□ -1.39
MSX2P35548 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC6.35□□□□□ -1.39
MSX2P35548 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.35□□□□□ -1.39
MSX2P35548 AC022167.5-202ENST00000637237 701 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
MSX2P35548 JAML-213ENST00000640745 951 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX2P35548 AL078595.2-201ENST00000605309 1780 ntBASIC6.35□□□□□ -1.39
MSX2P35548 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
MSX2P35548 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX2P35548 CASC19-228ENST00000641414 1684 ntBASIC6.35□□□□□ -1.39
MSX2P35548 DOCK11P1-201ENST00000553480 5932 ntBASIC6.35□□□□□ -1.39
MSX2P35548 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX2P35548 AL512329.1-201ENST00000404600 1592 ntBASIC6.35□□□□□ -1.39
MSX2P35548 AC022306.1-201ENST00000560489 1562 ntBASIC6.35□□□□□ -1.39
MSX2P35548 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
MSX2P35548 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
MSX2P35548 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX2P35548 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX2P35548 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX2P35548 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX2P35548 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
MSX2P35548 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 AC007159.1-201ENST00000566529 4706 ntBASIC6.34□□□□□ -1.39
MSX2P35548 AC093536.2-201ENST00000565257 1406 ntBASIC6.34□□□□□ -1.39
MSX2P35548 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
MSX2P35548 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX2P35548 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX2P35548 SNORA70.3-201ENST00000365075 132 ntBASIC6.34□□□□□ -1.39
MSX2P35548 SNORA70.5-201ENST00000365519 135 ntBASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms