Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 EEF1A1P17-201ENST00000547505 1275 ntBASIC6.76□□□□□ -1.33
BDNFP23560 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC6.76□□□□□ -1.33
BDNFP23560 AC004232.2-201ENST00000574245 821 ntBASIC6.76□□□□□ -1.33
BDNFP23560 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.76□□□□□ -1.33
BDNFP23560 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC6.76□□□□□ -1.33
BDNFP23560 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC6.76□□□□□ -1.33
BDNFP23560 AC009303.3-201ENST00000591103 736 ntBASIC6.76□□□□□ -1.33
BDNFP23560 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.76□□□□□ -1.33
BDNFP23560 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
BDNFP23560 AC139493.1-201ENST00000604368 397 ntBASIC6.76□□□□□ -1.33
BDNFP23560 RPSAP75-201ENST00000605848 301 ntBASIC6.76□□□□□ -1.33
BDNFP23560 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.76□□□□□ -1.33
BDNFP23560 AC105105.5-201ENST00000622635 1294 ntBASIC6.76□□□□□ -1.33
BDNFP23560 AL109924.4-201ENST00000623089 670 ntBASIC6.76□□□□□ -1.33
BDNFP23560 CASC19-274ENST00000642018 970 ntBASIC6.76□□□□□ -1.33
BDNFP23560 AC093775.1-201ENST00000624154 1868 ntBASIC6.76□□□□□ -1.33
BDNFP23560 TNPO1P2-201ENST00000426249 2665 ntBASIC6.76□□□□□ -1.33
BDNFP23560 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.76□□□□□ -1.33
BDNFP23560 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
BDNFP23560 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.76□□□□□ -1.33
BDNFP23560 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
BDNFP23560 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.76□□□□□ -1.33
BDNFP23560 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC6.76□□□□□ -1.33
BDNFP23560 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
BDNFP23560 AC087565.3-202ENST00000642085 1603 ntBASIC6.76□□□□□ -1.33
BDNFP23560 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
BDNFP23560 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.75□□□□□ -1.33
BDNFP23560 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.75□□□□□ -1.33
BDNFP23560 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.75□□□□□ -1.33
BDNFP23560 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC6.75□□□□□ -1.33
BDNFP23560 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.75□□□□□ -1.33
BDNFP23560 RBBP4P5-201ENST00000398583 1266 ntBASIC6.75□□□□□ -1.33
BDNFP23560 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC6.75□□□□□ -1.33
BDNFP23560 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC6.75□□□□□ -1.33
BDNFP23560 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC6.75□□□□□ -1.33
BDNFP23560 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC6.75□□□□□ -1.33
BDNFP23560 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC6.75□□□□□ -1.33
BDNFP23560 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.75□□□□□ -1.33
BDNFP23560 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.75□□□□□ -1.33
BDNFP23560 STRADBP1-201ENST00000478954 1281 ntBASIC6.75□□□□□ -1.33
BDNFP23560 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC6.75□□□□□ -1.33
BDNFP23560 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.75□□□□□ -1.33
BDNFP23560 NPIPB14P-203ENST00000532298 987 ntBASIC6.75□□□□□ -1.33
BDNFP23560 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.75□□□□□ -1.33
BDNFP23560 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.75□□□□□ -1.33
BDNFP23560 MIR4675-201ENST00000577898 77 ntBASIC6.75□□□□□ -1.33
BDNFP23560 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 SMIM12P1-201ENST00000603004 274 ntBASIC6.75□□□□□ -1.33
BDNFP23560 AC097467.4-201ENST00000605504 141 ntBASIC6.75□□□□□ -1.33
BDNFP23560 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.75□□□□□ -1.33
BDNFP23560 AC015722.2-201ENST00000622210 551 ntBASIC6.75□□□□□ -1.33
BDNFP23560 AL132640.3-201ENST00000630473 177 ntBASIC6.75□□□□□ -1.33
BDNFP23560 OR7E91P-202ENST00000642062 1198 ntBASIC6.75□□□□□ -1.33
BDNFP23560 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 AC013488.1-201ENST00000526618 1838 ntBASIC6.75□□□□□ -1.33
BDNFP23560 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.75□□□□□ -1.33
BDNFP23560 AC125336.1-201ENST00000508893 2827 ntBASIC6.75□□□□□ -1.33
BDNFP23560 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.75□□□□□ -1.33
BDNFP23560 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.75□□□□□ -1.33
BDNFP23560 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 CYP2G2P-201ENST00000594920 1485 ntBASIC6.74□□□□□ -1.33
BDNFP23560 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
BDNFP23560 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
BDNFP23560 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
BDNFP23560 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 RNA5SP188-201ENST00000362916 129 ntBASIC6.74□□□□□ -1.33
BDNFP23560 VN1R12P-201ENST00000403778 876 ntBASIC6.74□□□□□ -1.33
BDNFP23560 SNORA11.5-201ENST00000408163 128 ntBASIC6.74□□□□□ -1.33
BDNFP23560 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BDNFP23560 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.74□□□□□ -1.33
BDNFP23560 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.74□□□□□ -1.33
BDNFP23560 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.74□□□□□ -1.33
BDNFP23560 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.74□□□□□ -1.33
BDNFP23560 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.74□□□□□ -1.33
BDNFP23560 POU5F1P5-201ENST00000445059 658 ntBASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 137.8 ms