Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.73□□□□□ -1.49
SDC1P18827 RBMY2CP-201ENST00000448575 1157 ntBASIC5.73□□□□□ -1.49
SDC1P18827 RBMY2DP-202ENST00000448881 1157 ntBASIC5.73□□□□□ -1.49
SDC1P18827 AC002553.3-201ENST00000453002 341 ntBASIC5.73□□□□□ -1.49
SDC1P18827 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.73□□□□□ -1.49
SDC1P18827 MRPL57P6-201ENST00000506570 309 ntBASIC5.73□□□□□ -1.49
SDC1P18827 snoU109.5-201ENST00000516231 132 ntBASIC5.73□□□□□ -1.49
SDC1P18827 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.73□□□□□ -1.49
SDC1P18827 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 OR56A7P-201ENST00000524865 941 ntBASIC5.73□□□□□ -1.49
SDC1P18827 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.73□□□□□ -1.49
SDC1P18827 OR7A8P-201ENST00000595427 913 ntBASIC5.73□□□□□ -1.49
SDC1P18827 SMIM12P1-201ENST00000603004 274 ntBASIC5.73□□□□□ -1.49
SDC1P18827 WBP1LP12-201ENST00000604449 331 ntBASIC5.73□□□□□ -1.49
SDC1P18827 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.73□□□□□ -1.49
SDC1P18827 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
SDC1P18827 AC012676.3-201ENST00000614983 479 ntBASIC5.73□□□□□ -1.49
SDC1P18827 RFPL4AP6-201ENST00000616792 846 ntBASIC5.73□□□□□ -1.49
SDC1P18827 AC005899.7-201ENST00000618199 588 ntBASIC5.73□□□□□ -1.49
SDC1P18827 AL138693.1-201ENST00000622219 129 ntBASIC5.73□□□□□ -1.49
SDC1P18827 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.73□□□□□ -1.49
SDC1P18827 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
SDC1P18827 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.73□□□□□ -1.49
SDC1P18827 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.73□□□□□ -1.49
SDC1P18827 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 AC130304.1-201ENST00000622942 2385 ntBASIC5.73□□□□□ -1.49
SDC1P18827 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.73□□□□□ -1.49
SDC1P18827 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
SDC1P18827 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
SDC1P18827 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SDC1P18827 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.72□□□□□ -1.49
SDC1P18827 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SDC1P18827 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.72□□□□□ -1.49
SDC1P18827 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.72□□□□□ -1.49
SDC1P18827 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SDC1P18827 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.72□□□□□ -1.49
SDC1P18827 SNORA21-201ENST00000362423 132 ntBASIC5.72□□□□□ -1.49
SDC1P18827 RN7SKP77-201ENST00000363261 353 ntBASIC5.72□□□□□ -1.49
SDC1P18827 MIR551B-201ENST00000384984 96 ntBASIC5.72□□□□□ -1.49
SDC1P18827 MIR188-201ENST00000385034 86 ntBASIC5.72□□□□□ -1.49
SDC1P18827 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.72□□□□□ -1.49
SDC1P18827 AL132875.1-201ENST00000403623 949 ntBASIC5.72□□□□□ -1.49
SDC1P18827 SMC4P1-201ENST00000414479 527 ntBASIC5.72□□□□□ -1.49
SDC1P18827 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC5.72□□□□□ -1.49
SDC1P18827 NMD3P2-201ENST00000421815 761 ntBASIC5.72□□□□□ -1.49
SDC1P18827 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC5.72□□□□□ -1.49
SDC1P18827 KRT8P51-201ENST00000438938 274 ntBASIC5.72□□□□□ -1.49
SDC1P18827 RPL12P49-201ENST00000441100 121 ntBASIC5.72□□□□□ -1.49
SDC1P18827 SEPT14P12-201ENST00000442280 560 ntBASIC5.72□□□□□ -1.49
SDC1P18827 AC004890.1-201ENST00000461005 181 ntBASIC5.72□□□□□ -1.49
SDC1P18827 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC5.72□□□□□ -1.49
SDC1P18827 RN7SL552P-201ENST00000462094 276 ntBASIC5.72□□□□□ -1.49
SDC1P18827 OR7E22P-201ENST00000478335 1035 ntBASIC5.72□□□□□ -1.49
SDC1P18827 SNRPCP11-201ENST00000492453 205 ntBASIC5.72□□□□□ -1.49
SDC1P18827 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SDC1P18827 AC025766.1-201ENST00000514061 409 ntTSL 5 BASIC5.72□□□□□ -1.49
SDC1P18827 CR383658.1-201ENST00000514609 734 ntBASIC5.72□□□□□ -1.49
SDC1P18827 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.72□□□□□ -1.49
SDC1P18827 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.72□□□□□ -1.49
SDC1P18827 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC5.72□□□□□ -1.49
SDC1P18827 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.72□□□□□ -1.49
SDC1P18827 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC5.72□□□□□ -1.49
SDC1P18827 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC5.72□□□□□ -1.49
SDC1P18827 AL645933.2-201ENST00000606743 1207 ntBASIC5.72□□□□□ -1.49
SDC1P18827 SNX18P12-201ENST00000624821 759 ntBASIC5.72□□□□□ -1.49
SDC1P18827 AC007603.3-201ENST00000636915 979 ntBASIC5.72□□□□□ -1.49
SDC1P18827 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
SDC1P18827 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.72□□□□□ -1.49
SDC1P18827 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
SDC1P18827 TTC41P-205ENST00000551270 3963 ntBASIC5.72□□□□□ -1.49
SDC1P18827 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SDC1P18827 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.72□□□□□ -1.49
SDC1P18827 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC5.72□□□□□ -1.49
SDC1P18827 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SDC1P18827 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.72□□□□□ -1.49
SDC1P18827 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SDC1P18827 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SDC1P18827 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.49
SDC1P18827 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.71□□□□□ -1.49
SDC1P18827 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.49
SDC1P18827 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.49
SDC1P18827 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC5.71□□□□□ -1.5
SDC1P18827 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
SDC1P18827 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SDC1P18827 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
SDC1P18827 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SDC1P18827 RNA5SP211-201ENST00000365516 117 ntBASIC5.71□□□□□ -1.5
SDC1P18827 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.71□□□□□ -1.5
SDC1P18827 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SDC1P18827 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SDC1P18827 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.71□□□□□ -1.5
SDC1P18827 RN7SKP38-201ENST00000410782 309 ntBASIC5.71□□□□□ -1.5
SDC1P18827 RPL12P12-201ENST00000424633 501 ntBASIC5.71□□□□□ -1.5
SDC1P18827 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SDC1P18827 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.71□□□□□ -1.5
SDC1P18827 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SDC1P18827 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms