Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC016583.1-201ENST00000624221 2431 ntBASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 AP001541.1-201ENST00000623322 1904 ntBASIC11.61□□□□□ -0.55
SHROOM4Q9ULL8 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 AC097721.1-201ENST00000427150 1253 ntBASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 AC009237.1-201ENST00000442127 744 ntBASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 AL445466.1-201ENST00000448432 357 ntBASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 YWHAEP1-201ENST00000453697 763 ntBASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 BICD1-206ENST00000551086 423 ntTSL 3 BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 AL445670.1-201ENST00000618889 801 ntBASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 USP9YP3-201ENST00000434481 1766 ntBASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 AC092725.2-201ENST00000567658 1389 ntBASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SHROOM4Q9ULL8 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 UBE2V1P14-201ENST00000415815 558 ntBASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 SEPT14P12-201ENST00000442280 560 ntBASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 OTX2P1-201ENST00000450956 354 ntBASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 AC027026.1-201ENST00000532323 742 ntBASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 CU639417.4-201ENST00000623928 207 ntBASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SHROOM4Q9ULL8 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 SIAH1P1-201ENST00000479411 923 ntBASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 UBA52P7-201ENST00000486088 380 ntBASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 EIF4A2P5-201ENST00000529914 499 ntBASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 MIR5095-201ENST00000578844 88 ntBASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 AP001496.3-201ENST00000580230 913 ntBASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 AL137067.2-201ENST00000621202 131 ntBASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 AL691477.1-201ENST00000624398 162 ntBASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 EEF1A1P24-201ENST00000451469 1378 ntBASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 AC018765.1-201ENST00000623357 3446 ntBASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
SHROOM4Q9ULL8 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 RPL35AP3-201ENST00000414680 288 ntBASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 AC073594.1-201ENST00000462065 364 ntBASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 AC008655.2-201ENST00000597049 304 ntTSL 4 BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 AC012254.5-201ENST00000623573 478 ntBASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 KIF4CP-201ENST00000422742 1279 ntBASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 AL450996.1-201ENST00000445574 1202 ntBASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 OR5D15P-201ENST00000531671 942 ntBASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 MIR4776-2-201ENST00000580204 80 ntBASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 AL445647.2-201ENST00000615170 130 ntBASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
SHROOM4Q9ULL8 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 GNL2P1-201ENST00000451274 2190 ntBASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
SHROOM4Q9ULL8 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms