Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AC130360.2-201ENST00000533477 1556 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 CASC19-238ENST00000641523 1558 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 RNA5SP284-201ENST00000384547 118 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AL050335.1-201ENST00000396909 869 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 CDY17P-201ENST00000414121 1282 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 MARK2P12-201ENST00000420129 585 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 RPS7P14-201ENST00000426405 583 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 ATP6V1E1P1-201ENST00000439215 681 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 MGAT2P1-201ENST00000449718 797 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AC007998.1-201ENST00000474156 672 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 RPL34P33-201ENST00000486062 334 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 NPM1P27-201ENST00000502784 830 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AC010343.2-201ENST00000510162 224 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 RPL7L1P4-201ENST00000513004 707 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AP003396.4-201ENST00000527574 265 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 PRELID3BP3-201ENST00000584963 545 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 OR7A11P-201ENST00000597719 953 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AL008723.3-201ENST00000608926 449 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 AC025809.2-201ENST00000625085 1802 ntBASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
HDDC3Q8N4P3 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AC007114.2-201ENST00000576014 4281 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 TMSB4XP4-201ENST00000323496 618 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AMELX-201ENST00000348912 737 ntTSL 5 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 RN7SKP121-201ENST00000410842 305 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 SETP9-201ENST00000423837 832 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 VN1R38P-201ENST00000450265 887 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 HIGD1AP16-201ENST00000450986 258 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 PPIAP7-201ENST00000454070 489 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 SNORD46.2-201ENST00000516021 102 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AP000620.1-201ENST00000527147 504 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AC023389.2-201ENST00000580031 955 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AC097467.4-201ENST00000605504 141 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AC004801.6-201ENST00000616571 978 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 RFPL4AP6-201ENST00000616792 846 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 MIR6826-201ENST00000617808 98 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 MIR7159-201ENST00000620587 66 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 AL133243.2-201ENST00000610331 1621 ntBASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HDDC3Q8N4P3 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms