Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
MSH6P52701 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC8.45□□□□□ -1.06
MSH6P52701 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC8.45□□□□□ -1.06
MSH6P52701 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC8.45□□□□□ -1.06
MSH6P52701 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC8.45□□□□□ -1.06
MSH6P52701 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC8.45□□□□□ -1.06
MSH6P52701 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC8.45□□□□□ -1.06
MSH6P52701 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC8.45□□□□□ -1.06
MSH6P52701 AC012075.1-201ENST00000436549 580 ntBASIC8.45□□□□□ -1.06
MSH6P52701 CNOT7P2-201ENST00000441051 832 ntBASIC8.45□□□□□ -1.06
MSH6P52701 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC8.45□□□□□ -1.06
MSH6P52701 AC108161.1-201ENST00000461060 402 ntBASIC8.45□□□□□ -1.06
MSH6P52701 AC114728.1-201ENST00000488289 483 ntBASIC8.45□□□□□ -1.06
MSH6P52701 SNORA43.3-201ENST00000517240 103 ntBASIC8.45□□□□□ -1.06
MSH6P52701 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC8.45□□□□□ -1.06
MSH6P52701 ASB8-215ENST00000540782 659 ntTSL 3 BASIC8.45□□□□□ -1.06
MSH6P52701 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC8.45□□□□□ -1.06
MSH6P52701 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC8.45□□□□□ -1.06
MSH6P52701 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC8.45□□□□□ -1.06
MSH6P52701 AC015818.6-201ENST00000584274 634 ntBASIC8.45□□□□□ -1.06
MSH6P52701 AL953862.2-201ENST00000603089 820 ntBASIC8.45□□□□□ -1.06
MSH6P52701 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC8.45□□□□□ -1.06
MSH6P52701 CASC19-264ENST00000641912 1184 ntBASIC8.45□□□□□ -1.06
MSH6P52701 AC119674.1-217ENST00000641942 1086 ntBASIC8.45□□□□□ -1.06
MSH6P52701 SPATA31C1-201ENST00000420021 3895 ntBASIC8.45□□□□□ -1.06
MSH6P52701 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC8.44□□□□□ -1.06
MSH6P52701 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC8.44□□□□□ -1.06
MSH6P52701 EEF1A1P14-201ENST00000421195 1376 ntBASIC8.44□□□□□ -1.06
MSH6P52701 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
MSH6P52701 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC8.44□□□□□ -1.06
MSH6P52701 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC8.44□□□□□ -1.06
MSH6P52701 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC8.44□□□□□ -1.06
MSH6P52701 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC8.44□□□□□ -1.06
MSH6P52701 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC8.44□□□□□ -1.06
MSH6P52701 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC8.44□□□□□ -1.06
MSH6P52701 LINC02019-201ENST00000608605 2060 ntBASIC8.44□□□□□ -1.06
MSH6P52701 SELENOWP1-201ENST00000322792 252 ntBASIC8.44□□□□□ -1.06
MSH6P52701 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC8.44□□□□□ -1.06
MSH6P52701 AC008171.1-201ENST00000395058 200 ntBASIC8.44□□□□□ -1.06
MSH6P52701 RPL23AP27-201ENST00000415161 451 ntBASIC8.44□□□□□ -1.06
MSH6P52701 EEF1B2P5-201ENST00000444820 548 ntBASIC8.44□□□□□ -1.06
MSH6P52701 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC8.44□□□□□ -1.06
MSH6P52701 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
MSH6P52701 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC8.44□□□□□ -1.06
MSH6P52701 IGBP1P1-201ENST00000554337 1009 ntBASIC8.44□□□□□ -1.06
MSH6P52701 HCG18-243ENST00000602498 327 ntTSL 3 BASIC8.44□□□□□ -1.06
MSH6P52701 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC8.44□□□□□ -1.06
MSH6P52701 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC8.44□□□□□ -1.06
MSH6P52701 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
MSH6P52701 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC8.44□□□□□ -1.06
MSH6P52701 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC8.44□□□□□ -1.06
MSH6P52701 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
MSH6P52701 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
MSH6P52701 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC8.43□□□□□ -1.06
MSH6P52701 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC8.43□□□□□ -1.06
MSH6P52701 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC8.43□□□□□ -1.06
MSH6P52701 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC8.43□□□□□ -1.06
MSH6P52701 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 OR6E1P-201ENST00000414424 923 ntBASIC8.43□□□□□ -1.06
MSH6P52701 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC8.43□□□□□ -1.06
MSH6P52701 AL139148.1-201ENST00000427122 680 ntBASIC8.43□□□□□ -1.06
MSH6P52701 FABP7P2-201ENST00000429946 379 ntBASIC8.43□□□□□ -1.06
MSH6P52701 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC8.43□□□□□ -1.06
MSH6P52701 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC8.43□□□□□ -1.06
MSH6P52701 HMGN2P6-201ENST00000551091 273 ntBASIC8.43□□□□□ -1.06
MSH6P52701 AC004825.1-201ENST00000555068 586 ntBASIC8.43□□□□□ -1.06
MSH6P52701 AL049872.1-201ENST00000556323 322 ntBASIC8.43□□□□□ -1.06
MSH6P52701 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC8.43□□□□□ -1.06
MSH6P52701 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC8.43□□□□□ -1.06
MSH6P52701 AL359704.2-201ENST00000604335 521 ntBASIC8.43□□□□□ -1.06
MSH6P52701 AL512329.2-201ENST00000607350 548 ntBASIC8.43□□□□□ -1.06
MSH6P52701 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC8.43□□□□□ -1.06
MSH6P52701 MIR6820-201ENST00000611508 62 ntBASIC8.43□□□□□ -1.06
MSH6P52701 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC8.43□□□□□ -1.06
MSH6P52701 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC8.43□□□□□ -1.06
MSH6P52701 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC8.43□□□□□ -1.06
MSH6P52701 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC8.42□□□□□ -1.06
MSH6P52701 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC8.42□□□□□ -1.06
MSH6P52701 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
MSH6P52701 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
MSH6P52701 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
MSH6P52701 AL161756.3-201ENST00000641216 2071 ntBASIC8.42□□□□□ -1.06
MSH6P52701 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
MSH6P52701 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
MSH6P52701 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC8.42□□□□□ -1.06
MSH6P52701 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC8.42□□□□□ -1.06
MSH6P52701 AL450996.1-201ENST00000445574 1202 ntBASIC8.42□□□□□ -1.06
MSH6P52701 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC8.42□□□□□ -1.06
MSH6P52701 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC8.42□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms