Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
SOX3P41225 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.8□□□□□ -1.48
SOX3P41225 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 ZNF101P1-201ENST00000435701 1720 ntBASIC5.79□□□□□ -1.48
SOX3P41225 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.79□□□□□ -1.48
SOX3P41225 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 AL133243.2-201ENST00000610331 1621 ntBASIC5.79□□□□□ -1.48
SOX3P41225 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 RNA5SP478-201ENST00000364657 115 ntBASIC5.79□□□□□ -1.48
SOX3P41225 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX3P41225 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX3P41225 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX3P41225 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 AL136455.1-201ENST00000441083 1240 ntBASIC5.79□□□□□ -1.48
SOX3P41225 DNAJC19P5-201ENST00000443295 316 ntBASIC5.79□□□□□ -1.48
SOX3P41225 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.79□□□□□ -1.48
SOX3P41225 MTCO3P17-201ENST00000443775 513 ntBASIC5.79□□□□□ -1.48
SOX3P41225 RPL5P7-201ENST00000444235 813 ntBASIC5.79□□□□□ -1.48
SOX3P41225 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.79□□□□□ -1.48
SOX3P41225 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC5.79□□□□□ -1.48
SOX3P41225 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.79□□□□□ -1.48
SOX3P41225 AC010343.2-201ENST00000510162 224 ntBASIC5.79□□□□□ -1.48
SOX3P41225 BCAS2P1-201ENST00000528022 632 ntBASIC5.79□□□□□ -1.48
SOX3P41225 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX3P41225 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC5.79□□□□□ -1.48
SOX3P41225 AC036111.2-201ENST00000533247 901 ntBASIC5.79□□□□□ -1.48
SOX3P41225 AC006512.2-201ENST00000543250 486 ntBASIC5.79□□□□□ -1.48
SOX3P41225 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.79□□□□□ -1.48
SOX3P41225 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX3P41225 HNRNPCP1-201ENST00000556181 766 ntBASIC5.79□□□□□ -1.48
SOX3P41225 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 AP005136.2-201ENST00000583253 1049 ntBASIC5.79□□□□□ -1.48
SOX3P41225 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC5.79□□□□□ -1.48
SOX3P41225 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 AC002044.3-201ENST00000623314 541 ntBASIC5.79□□□□□ -1.48
SOX3P41225 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX3P41225 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX3P41225 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 AC078880.4-201ENST00000617627 1749 ntBASIC5.79□□□□□ -1.48
SOX3P41225 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX3P41225 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX3P41225 AC092724.1-201ENST00000624623 3397 ntBASIC5.78□□□□□ -1.48
SOX3P41225 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
SOX3P41225 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX3P41225 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.78□□□□□ -1.48
SOX3P41225 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.78□□□□□ -1.48
SOX3P41225 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.78□□□□□ -1.48
SOX3P41225 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
SOX3P41225 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
SOX3P41225 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SOX3P41225 OR56A4-201ENST00000330728 1209 ntBASIC5.78□□□□□ -1.48
SOX3P41225 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SOX3P41225 RN7SKP144-201ENST00000411108 279 ntBASIC5.78□□□□□ -1.48
SOX3P41225 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.78□□□□□ -1.48
SOX3P41225 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.78□□□□□ -1.48
SOX3P41225 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.78□□□□□ -1.48
SOX3P41225 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX3P41225 PSMD10P2-201ENST00000432890 672 ntBASIC5.78□□□□□ -1.48
SOX3P41225 AL138899.2-201ENST00000439139 499 ntBASIC5.78□□□□□ -1.48
SOX3P41225 PCNPP2-201ENST00000441651 455 ntBASIC5.78□□□□□ -1.48
SOX3P41225 AL590004.3-202ENST00000445883 451 ntBASIC5.78□□□□□ -1.48
SOX3P41225 AL022237.1-201ENST00000446663 358 ntBASIC5.78□□□□□ -1.48
SOX3P41225 VPS25P1-201ENST00000455691 508 ntBASIC5.78□□□□□ -1.48
SOX3P41225 RN7SKP70-201ENST00000516655 271 ntBASIC5.78□□□□□ -1.48
SOX3P41225 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC5.78□□□□□ -1.48
SOX3P41225 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
SOX3P41225 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX3P41225 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC5.78□□□□□ -1.48
SOX3P41225 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SOX3P41225 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC5.78□□□□□ -1.48
SOX3P41225 MRPS21P8-201ENST00000569196 235 ntBASIC5.78□□□□□ -1.48
SOX3P41225 AC002310.3-201ENST00000569728 723 ntBASIC5.78□□□□□ -1.48
SOX3P41225 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.78□□□□□ -1.48
SOX3P41225 AL499605.1-201ENST00000604628 403 ntBASIC5.78□□□□□ -1.48
SOX3P41225 AL080312.2-201ENST00000613001 630 ntBASIC5.78□□□□□ -1.48
SOX3P41225 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX3P41225 MIR6071-201ENST00000616741 78 ntBASIC5.78□□□□□ -1.48
SOX3P41225 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SOX3P41225 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SOX3P41225 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms