Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC7.2□□□□□ -1.26
BRCA1P38398 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 AL080317.3-201ENST00000607434 4315 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
BRCA1P38398 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
BRCA1P38398 AC092692.1-201ENST00000623625 2595 ntBASIC7.2□□□□□ -1.26
BRCA1P38398 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC7.19□□□□□ -1.26
BRCA1P38398 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 RPL23P2-201ENST00000320371 421 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 RNA5SP87-201ENST00000384155 118 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC7.19□□□□□ -1.26
BRCA1P38398 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC7.19□□□□□ -1.26
BRCA1P38398 VDAC2P4-201ENST00000452925 711 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 CLMN-206ENST00000556441 452 ntTSL 5 BASIC7.19□□□□□ -1.26
BRCA1P38398 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC7.19□□□□□ -1.26
BRCA1P38398 CYP8B1-201ENST00000316161 3974 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
BRCA1P38398 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC7.19□□□□□ -1.26
BRCA1P38398 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 AC105235.1-201ENST00000623208 1816 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
BRCA1P38398 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
BRCA1P38398 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC7.19□□□□□ -1.26
BRCA1P38398 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC7.19□□□□□ -1.26
BRCA1P38398 DPY19L2P2-203ENST00000435536 1858 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC7.19□□□□□ -1.26
BRCA1P38398 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC7.19□□□□□ -1.26
BRCA1P38398 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC7.19□□□□□ -1.26
BRCA1P38398 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.19□□□□□ -1.26
BRCA1P38398 RNA5SP339-201ENST00000390987 122 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC7.19□□□□□ -1.26
BRCA1P38398 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC7.19□□□□□ -1.26
BRCA1P38398 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC7.19□□□□□ -1.26
BRCA1P38398 DNAJB5P1-201ENST00000454004 806 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 AC126177.5-201ENST00000549599 178 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 OR11J2P-201ENST00000555298 907 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 AC106730.2-201ENST00000566641 540 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 AC087763.1-201ENST00000603391 286 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 AC133644.2-201ENST00000608142 540 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 MIR378J-201ENST00000611988 109 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 uc_338.18-201ENST00000615451 175 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 AC012254.5-201ENST00000623573 478 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 TMEM75-201ENST00000624314 2165 ntBASIC7.19□□□□□ -1.26
BRCA1P38398 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC7.19□□□□□ -1.26
BRCA1P38398 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
BRCA1P38398 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
BRCA1P38398 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
BRCA1P38398 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
BRCA1P38398 USP3-201ENST00000268049 5311 ntTSL 5 BASIC7.18□□□□□ -1.26
BRCA1P38398 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
BRCA1P38398 ADAM20P1-202ENST00000556964 3034 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
BRCA1P38398 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
BRCA1P38398 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
BRCA1P38398 RNA5SP211-201ENST00000365516 117 ntBASIC7.18□□□□□ -1.26
BRCA1P38398 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC7.18□□□□□ -1.26
BRCA1P38398 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC7.18□□□□□ -1.26
BRCA1P38398 PA2G4P6-201ENST00000438325 1197 ntBASIC7.18□□□□□ -1.26
BRCA1P38398 RPS27AP3-201ENST00000453803 454 ntBASIC7.18□□□□□ -1.26
BRCA1P38398 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC7.18□□□□□ -1.26
BRCA1P38398 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC7.18□□□□□ -1.26
BRCA1P38398 AC022832.1-201ENST00000530718 645 ntBASIC7.18□□□□□ -1.26
BRCA1P38398 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
BRCA1P38398 DCN-210ENST00000547568 823 ntTSL 3 BASIC7.18□□□□□ -1.26
BRCA1P38398 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC7.18□□□□□ -1.26
BRCA1P38398 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC7.18□□□□□ -1.26
BRCA1P38398 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC7.18□□□□□ -1.26
BRCA1P38398 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
BRCA1P38398 AL118522.2-201ENST00000616045 615 ntBASIC7.18□□□□□ -1.26
BRCA1P38398 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC7.18□□□□□ -1.26
BRCA1P38398 AC003992.1-201ENST00000635364 557 ntBASIC7.18□□□□□ -1.26
BRCA1P38398 LINC01739-205ENST00000641890 573 ntBASIC7.18□□□□□ -1.26
BRCA1P38398 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
BRCA1P38398 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC7.18□□□□□ -1.26
BRCA1P38398 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
BRCA1P38398 AC137056.2-201ENST00000624055 1958 ntBASIC7.18□□□□□ -1.26
BRCA1P38398 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC7.18□□□□□ -1.26
BRCA1P38398 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
BRCA1P38398 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
BRCA1P38398 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.17□□□□□ -1.26
BRCA1P38398 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.17□□□□□ -1.26
BRCA1P38398 AC005294.1-201ENST00000355509 281 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 RNA5SP30-201ENST00000365552 115 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC7.17□□□□□ -1.26
BRCA1P38398 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
BRCA1P38398 SLC35E1P1-201ENST00000419313 864 ntBASIC7.17□□□□□ -1.26
BRCA1P38398 EIF2S2P3-201ENST00000428356 999 ntBASIC7.17□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms