Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX2P35548 GAPDHP38-201ENST00000503632 1002 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AC010486.2-201ENST00000505572 483 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX2P35548 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX2P35548 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX2P35548 HMGN1P17-201ENST00000513734 295 ntBASIC6.37□□□□□ -1.39
MSX2P35548 RNU6-276P-201ENST00000516114 96 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AL135934.1-201ENST00000527684 537 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX2P35548 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX2P35548 C1GALT1P1-201ENST00000548895 1089 ntBASIC6.37□□□□□ -1.39
MSX2P35548 ORMDL2-203ENST00000548974 671 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
MSX2P35548 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX2P35548 RNASE11-206ENST00000553849 1101 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC6.37□□□□□ -1.39
MSX2P35548 AL049870.3-201ENST00000555157 360 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX2P35548 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX2P35548 DRAIC-206ENST00000559029 309 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX2P35548 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX2P35548 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC6.37□□□□□ -1.39
MSX2P35548 EIF1P5-201ENST00000585002 234 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 IFNA5-201ENST00000610521 987 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
MSX2P35548 AL139123.1-201ENST00000612008 430 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AC093875.1-201ENST00000623688 504 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AP003108.4-201ENST00000623917 878 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AP003497.2-201ENST00000624220 967 ntBASIC6.37□□□□□ -1.39
MSX2P35548 RMDN2-AS1-210ENST00000630021 1053 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX2P35548 AC073488.7-201ENST00000633785 778 ntBASIC6.37□□□□□ -1.39
MSX2P35548 AC063952.1-203ENST00000634410 658 ntBASIC6.37□□□□□ -1.39
MSX2P35548 METTL8-218ENST00000638989 876 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX2P35548 METTL8-219ENST00000640734 726 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX2P35548 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX2P35548 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
MSX2P35548 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX2P35548 Z97989.1-201ENST00000531702 2421 ntBASIC6.36□□□□□ -1.39
MSX2P35548 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX2P35548 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX2P35548 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX2P35548 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX2P35548 PAGE4-201ENST00000218068 499 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSX2P35548 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
MSX2P35548 RN7SKP118-201ENST00000364331 330 ntBASIC6.36□□□□□ -1.39
MSX2P35548 Y_RNA.505-201ENST00000384489 102 ntBASIC6.36□□□□□ -1.39
MSX2P35548 MIR513B-201ENST00000385136 84 ntBASIC6.36□□□□□ -1.39
MSX2P35548 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX2P35548 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX2P35548 AL024497.1-201ENST00000412954 631 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX2P35548 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX2P35548 NIFKP3-201ENST00000417799 865 ntBASIC6.36□□□□□ -1.39
MSX2P35548 AC097721.1-201ENST00000427150 1253 ntBASIC6.36□□□□□ -1.39
MSX2P35548 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX2P35548 AC104076.1-201ENST00000428080 265 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX2P35548 AC018804.1-201ENST00000430381 618 ntBASIC6.36□□□□□ -1.39
MSX2P35548 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX2P35548 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX2P35548 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX2P35548 CR769776.1-201ENST00000441254 787 ntBASIC6.36□□□□□ -1.39
MSX2P35548 VN1R25P-201ENST00000443385 738 ntBASIC6.36□□□□□ -1.39
MSX2P35548 DBIL5P2-201ENST00000443827 253 ntBASIC6.36□□□□□ -1.39
MSX2P35548 MTND2P28-201ENST00000457540 1044 ntBASIC6.36□□□□□ -1.39
MSX2P35548 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC6.36□□□□□ -1.39
MSX2P35548 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSX2P35548 AC091982.1-202ENST00000473923 343 ntBASIC6.36□□□□□ -1.39
MSX2P35548 RAP1BP2-201ENST00000478270 544 ntBASIC6.36□□□□□ -1.39
MSX2P35548 AC079944.1-201ENST00000485426 495 ntBASIC6.36□□□□□ -1.39
MSX2P35548 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX2P35548 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC6.36□□□□□ -1.39
MSX2P35548 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC6.36□□□□□ -1.39
MSX2P35548 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX2P35548 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC6.36□□□□□ -1.39
MSX2P35548 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
MSX2P35548 GTF2IP11-201ENST00000526931 420 ntBASIC6.36□□□□□ -1.39
MSX2P35548 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC6.36□□□□□ -1.39
MSX2P35548 PHBP2-201ENST00000532859 806 ntBASIC6.36□□□□□ -1.39
MSX2P35548 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC6.36□□□□□ -1.39
MSX2P35548 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
MSX2P35548 AC090971.3-201ENST00000557871 1041 ntBASIC6.36□□□□□ -1.39
MSX2P35548 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
MSX2P35548 OR4F28P-201ENST00000559128 938 ntBASIC6.36□□□□□ -1.39
MSX2P35548 AL132640.1-201ENST00000559594 619 ntBASIC6.36□□□□□ -1.39
MSX2P35548 UBE2CP4-201ENST00000561405 535 ntBASIC6.36□□□□□ -1.39
MSX2P35548 RN7SL199P-201ENST00000578752 281 ntBASIC6.36□□□□□ -1.39
MSX2P35548 RN7SL656P-201ENST00000579044 281 ntBASIC6.36□□□□□ -1.39
MSX2P35548 RN7SL404P-201ENST00000582421 281 ntBASIC6.36□□□□□ -1.39
MSX2P35548 OR4F8P-201ENST00000589943 937 ntBASIC6.36□□□□□ -1.39
MSX2P35548 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC6.36□□□□□ -1.39
MSX2P35548 AC018690.1-201ENST00000608144 626 ntBASIC6.36□□□□□ -1.39
MSX2P35548 RN7SL126P-201ENST00000616400 299 ntBASIC6.36□□□□□ -1.39
MSX2P35548 AC009318.3-201ENST00000616916 503 ntBASIC6.36□□□□□ -1.39
MSX2P35548 IL13-206ENST00000617259 498 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
MSX2P35548 TCL6_3.1-201ENST00000619064 137 ntBASIC6.36□□□□□ -1.39
MSX2P35548 AC012254.5-201ENST00000623573 478 ntBASIC6.36□□□□□ -1.39
MSX2P35548 LINC02211-204ENST00000642024 1070 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms