Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC7.25□□□□□ -1.25
SMARCA1P28370 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SMARCA1P28370 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
SMARCA1P28370 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC7.25□□□□□ -1.25
SMARCA1P28370 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
SMARCA1P28370 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC7.25□□□□□ -1.25
SMARCA1P28370 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC7.25□□□□□ -1.25
SMARCA1P28370 AL157831.2-201ENST00000564681 3095 ntBASIC7.25□□□□□ -1.25
SMARCA1P28370 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SMARCA1P28370 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SMARCA1P28370 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC7.25□□□□□ -1.25
SMARCA1P28370 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SMARCA1P28370 NCOA4P2-201ENST00000340589 1813 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.24□□□□□ -1.25
SMARCA1P28370 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 CREM-217ENST00000439705 2306 ntTSL 5 BASIC7.24□□□□□ -1.25
SMARCA1P28370 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC7.24□□□□□ -1.25
SMARCA1P28370 AL133243.2-201ENST00000610331 1621 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AC119674.1-213ENST00000641177 1386 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 CASC19-255ENST00000641733 1385 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
SMARCA1P28370 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
SMARCA1P28370 MIR433-201ENST00000384837 93 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AL445238.1-204ENST00000400311 463 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC7.24□□□□□ -1.25
SMARCA1P28370 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC7.24□□□□□ -1.25
SMARCA1P28370 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC7.24□□□□□ -1.25
SMARCA1P28370 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 RPSAP40-201ENST00000442343 891 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AL355355.1-201ENST00000442900 793 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AC010240.2-201ENST00000445363 1205 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC7.24□□□□□ -1.25
SMARCA1P28370 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 HMGB1P7-201ENST00000450921 612 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 OR52Y1P-201ENST00000452418 828 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.24□□□□□ -1.25
SMARCA1P28370 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC7.24□□□□□ -1.25
SMARCA1P28370 AC118758.1-202ENST00000454719 225 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AL356390.1-201ENST00000455684 397 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC7.24□□□□□ -1.25
SMARCA1P28370 AC093827.1-201ENST00000480094 861 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 RPL12P30-201ENST00000488389 499 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC7.24□□□□□ -1.25
SMARCA1P28370 SNX18P24-201ENST00000505249 671 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 HMGN1P17-201ENST00000513734 295 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 RNA5SP434-201ENST00000516647 121 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC7.24□□□□□ -1.25
SMARCA1P28370 OR6M2P-201ENST00000529831 871 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC7.24□□□□□ -1.25
SMARCA1P28370 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC7.24□□□□□ -1.25
SMARCA1P28370 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC7.24□□□□□ -1.25
SMARCA1P28370 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC7.24□□□□□ -1.25
SMARCA1P28370 LAPTM4BP2-201ENST00000604542 446 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 RPSAP75-201ENST00000605848 301 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AC117490.2-201ENST00000610042 594 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 WBP1LP8-201ENST00000617401 327 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 FO681491.1-202ENST00000623392 737 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AP001002.2-201ENST00000625137 386 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 AL357140.4-201ENST00000636827 412 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC7.24□□□□□ -1.25
SMARCA1P28370 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC7.24□□□□□ -1.25
SMARCA1P28370 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC7.24□□□□□ -1.25
SMARCA1P28370 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 AC011369.2-201ENST00000624423 1567 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC7.24□□□□□ -1.25
SMARCA1P28370 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC7.24□□□□□ -1.25
SMARCA1P28370 AC005034.3-201ENST00000604845 1747 ntBASIC7.24□□□□□ -1.25
SMARCA1P28370 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC7.24□□□□□ -1.25
SMARCA1P28370 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC7.23□□□□□ -1.25
SMARCA1P28370 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC7.23□□□□□ -1.25
SMARCA1P28370 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
SMARCA1P28370 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 AC112243.1-201ENST00000623949 3851 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.23□□□□□ -1.25
SMARCA1P28370 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC7.23□□□□□ -1.25
SMARCA1P28370 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC7.23□□□□□ -1.25
SMARCA1P28370 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
SMARCA1P28370 SNORD8-201ENST00000363915 110 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 RNU6-819P-201ENST00000364116 107 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 RN7SKP237-201ENST00000364663 301 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC7.23□□□□□ -1.25
SMARCA1P28370 MIR1275-201ENST00000408770 80 ntBASIC7.23□□□□□ -1.25
SMARCA1P28370 SEPT14P12-201ENST00000442280 560 ntBASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms