Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSH3P20585 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
MSH3P20585 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH3P20585 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSH3P20585 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
MSH3P20585 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.16□□□□□ -1.42
MSH3P20585 IMMTP1-201ENST00000435590 2219 ntBASIC6.16□□□□□ -1.42
MSH3P20585 RN7SKP171-201ENST00000364417 303 ntBASIC6.16□□□□□ -1.42
MSH3P20585 SNORA43.1-201ENST00000364863 140 ntBASIC6.16□□□□□ -1.42
MSH3P20585 RNA5SP279-201ENST00000365513 117 ntBASIC6.16□□□□□ -1.42
MSH3P20585 RBBP4P5-201ENST00000398583 1266 ntBASIC6.16□□□□□ -1.42
MSH3P20585 YWHAZP6-201ENST00000399764 738 ntBASIC6.16□□□□□ -1.42
MSH3P20585 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH3P20585 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.16□□□□□ -1.42
MSH3P20585 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH3P20585 PSMD10P2-201ENST00000432890 672 ntBASIC6.16□□□□□ -1.42
MSH3P20585 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.16□□□□□ -1.42
MSH3P20585 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH3P20585 RPL7L1P3-201ENST00000455249 689 ntBASIC6.16□□□□□ -1.42
MSH3P20585 RN7SL254P-201ENST00000460609 284 ntBASIC6.16□□□□□ -1.42
MSH3P20585 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.16□□□□□ -1.42
MSH3P20585 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.16□□□□□ -1.42
MSH3P20585 RN7SL221P-201ENST00000466190 281 ntBASIC6.16□□□□□ -1.42
MSH3P20585 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.16□□□□□ -1.42
MSH3P20585 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.16□□□□□ -1.42
MSH3P20585 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH3P20585 HMGN1P17-201ENST00000513734 295 ntBASIC6.16□□□□□ -1.42
MSH3P20585 MAST4-IT1-201ENST00000514241 658 ntBASIC6.16□□□□□ -1.42
MSH3P20585 RPA2P3-201ENST00000533268 770 ntBASIC6.16□□□□□ -1.42
MSH3P20585 AP001858.2-201ENST00000536213 601 ntBASIC6.16□□□□□ -1.42
MSH3P20585 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH3P20585 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH3P20585 AC027229.1-201ENST00000583887 253 ntBASIC6.16□□□□□ -1.42
MSH3P20585 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH3P20585 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.16□□□□□ -1.42
MSH3P20585 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.16□□□□□ -1.42
MSH3P20585 MIR6780B-201ENST00000610307 79 ntBASIC6.16□□□□□ -1.42
MSH3P20585 AC022106.1-201ENST00000612834 766 ntBASIC6.16□□□□□ -1.42
MSH3P20585 uc_338.31-201ENST00000615595 186 ntBASIC6.16□□□□□ -1.42
MSH3P20585 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH3P20585 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.16□□□□□ -1.42
MSH3P20585 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.16□□□□□ -1.42
MSH3P20585 AC116667.2-201ENST00000641075 823 ntBASIC6.16□□□□□ -1.42
MSH3P20585 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH3P20585 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH3P20585 AP001541.1-201ENST00000623322 1904 ntBASIC6.16□□□□□ -1.42
MSH3P20585 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.16□□□□□ -1.42
MSH3P20585 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.16□□□□□ -1.42
MSH3P20585 AL133243.2-201ENST00000610331 1621 ntBASIC6.16□□□□□ -1.42
MSH3P20585 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSH3P20585 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSH3P20585 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH3P20585 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.16□□□□□ -1.42
MSH3P20585 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
MSH3P20585 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
MSH3P20585 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH3P20585 NCOA4P2-201ENST00000340589 1813 ntBASIC6.15□□□□□ -1.42
MSH3P20585 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSH3P20585 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSH3P20585 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSH3P20585 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.15□□□□□ -1.42
MSH3P20585 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC6.15□□□□□ -1.42
MSH3P20585 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSH3P20585 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSH3P20585 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.15□□□□□ -1.42
MSH3P20585 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
MSH3P20585 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSH3P20585 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.15□□□□□ -1.42
MSH3P20585 AC024651.2-201ENST00000562480 2098 ntBASIC6.15□□□□□ -1.42
MSH3P20585 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
MSH3P20585 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSH3P20585 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSH3P20585 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.42
MSH3P20585 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSH3P20585 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.15□□□□□ -1.42
MSH3P20585 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.15□□□□□ -1.42
MSH3P20585 GAPDHP59-201ENST00000435908 267 ntBASIC6.15□□□□□ -1.42
MSH3P20585 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC6.15□□□□□ -1.42
MSH3P20585 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.15□□□□□ -1.42
MSH3P20585 OR3D1P-201ENST00000438288 955 ntBASIC6.15□□□□□ -1.42
MSH3P20585 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.15□□□□□ -1.42
MSH3P20585 AC128716.1-201ENST00000475129 166 ntBASIC6.15□□□□□ -1.42
MSH3P20585 RPL34P33-201ENST00000486062 334 ntBASIC6.15□□□□□ -1.42
MSH3P20585 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSH3P20585 OR4A40P-201ENST00000533878 948 ntBASIC6.15□□□□□ -1.42
MSH3P20585 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC6.15□□□□□ -1.42
MSH3P20585 AC004232.2-201ENST00000574245 821 ntBASIC6.15□□□□□ -1.42
MSH3P20585 MIR3189-201ENST00000578735 73 ntBASIC6.15□□□□□ -1.42
MSH3P20585 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.15□□□□□ -1.42
MSH3P20585 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.15□□□□□ -1.42
MSH3P20585 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.15□□□□□ -1.42
MSH3P20585 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.15□□□□□ -1.42
MSH3P20585 AP001823.1-201ENST00000604056 1003 ntBASIC6.15□□□□□ -1.42
MSH3P20585 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC6.15□□□□□ -1.42
MSH3P20585 AL353729.2-201ENST00000605859 1249 ntBASIC6.15□□□□□ -1.42
MSH3P20585 AL021368.3-201ENST00000607119 578 ntBASIC6.15□□□□□ -1.42
MSH3P20585 AC009779.8-202ENST00000607990 932 ntBASIC6.15□□□□□ -1.42
MSH3P20585 AL359091.2-201ENST00000609303 556 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms