Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC091965.3-201ENST00000506236 208 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXD4P09016 HMGN1P17-201ENST00000513734 295 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 ZNF519P4-201ENST00000514008 125 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 TBCA-209ENST00000522370 435 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXD4P09016 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXD4P09016 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.75□□□□□ -1.49
HOXD4P09016 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.75□□□□□ -1.49
HOXD4P09016 AP001437.1-201ENST00000608783 456 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.75□□□□□ -1.49
HOXD4P09016 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC5.75□□□□□ -1.49
HOXD4P09016 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXD4P09016 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC5.75□□□□□ -1.49
HOXD4P09016 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HOXD4P09016 CASC19-228ENST00000641414 1684 ntBASIC5.75□□□□□ -1.49
HOXD4P09016 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC5.75□□□□□ -1.49
HOXD4P09016 BTK-209ENST00000618050 2417 ntTSL 5 BASIC5.75□□□□□ -1.49
HOXD4P09016 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXD4P09016 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXD4P09016 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
HOXD4P09016 AC025470.1-201ENST00000510053 2032 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXD4P09016 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 AC110373.1-201ENST00000505994 3505 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC5.74□□□□□ -1.49
HOXD4P09016 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXD4P09016 AL354707.3-201ENST00000427308 331 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 RPS29P14-201ENST00000431518 171 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXD4P09016 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXD4P09016 AC022206.1-201ENST00000495947 347 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXD4P09016 OR51A1P-201ENST00000511110 946 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 AC106800.3-201ENST00000511389 308 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 IGHV3-57-201ENST00000520143 280 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 IGKV3D-34-201ENST00000522638 302 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.74□□□□□ -1.49
HOXD4P09016 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC5.74□□□□□ -1.49
HOXD4P09016 NPM1P5-201ENST00000557228 838 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 TPRX1P1-201ENST00000557620 319 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC5.74□□□□□ -1.49
HOXD4P09016 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.74□□□□□ -1.49
HOXD4P09016 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 AC091167.5-201ENST00000605689 894 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 AL354718.1-201ENST00000619764 589 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 AC026124.2-201ENST00000621847 656 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 AC123912.3-201ENST00000600907 1367 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 AL353743.3-201ENST00000442109 1468 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC5.74□□□□□ -1.49
HOXD4P09016 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXD4P09016 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXD4P09016 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXD4P09016 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXD4P09016 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HOXD4P09016 AC025809.2-201ENST00000625085 1802 ntBASIC5.74□□□□□ -1.49
HOXD4P09016 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
HOXD4P09016 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HOXD4P09016 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
HOXD4P09016 DOCK11P1-201ENST00000553480 5932 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 AL449283.1-201ENST00000602631 3403 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
HOXD4P09016 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXD4P09016 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 OFD1P15Y-201ENST00000411536 1392 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HOXD4P09016 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.73□□□□□ -1.49
HOXD4P09016 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXD4P09016 RN7SKP78-201ENST00000364711 318 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 TINAG-202ENST00000370864 692 ntTSL 2 BASIC5.73□□□□□ -1.49
HOXD4P09016 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HOXD4P09016 RN7SKP281-201ENST00000410472 352 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 DHFRP2-201ENST00000414224 547 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 MTND2P12-201ENST00000417560 1252 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.73□□□□□ -1.49
HOXD4P09016 AL157884.1-201ENST00000424561 454 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 AL121578.1-201ENST00000428051 892 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXD4P09016 RPL6P30-201ENST00000443382 862 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.73□□□□□ -1.49
HOXD4P09016 AL139156.3-201ENST00000454802 394 ntBASIC5.73□□□□□ -1.49
HOXD4P09016 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HOXD4P09016 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.73□□□□□ -1.49
HOXD4P09016 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms