Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AKAP17BP-201ENST00000431706 2719 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 DMD-211ENST00000378707 7410 ntTSL 5 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 MIR365B-201ENST00000362317 111 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 RNA5SP333-201ENST00000363466 118 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 RNA5SP334-201ENST00000364825 118 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 RPSAP32-201ENST00000432681 526 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 PMS2P9-201ENST00000441237 515 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC118758.1-202ENST00000454719 225 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 RN7SL168P-201ENST00000463821 279 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 COX6B1P4-201ENST00000519826 484 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC107958.1-201ENST00000556576 290 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC122134.1-201ENST00000565664 1104 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC137695.1-201ENST00000604126 489 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC005828.7-201ENST00000607331 556 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AL606537.1-201ENST00000607258 2011 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 OR10AB1P-202ENST00000641219 1686 ntBASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
CHMP4AQ9BY43 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 DOCK11P1-201ENST00000553480 5932 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AC123769.1-201ENST00000530992 3192 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 SNORD35A-201ENST00000363389 86 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 RN7SKP237-201ENST00000364663 301 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 RN7SKP186-201ENST00000365371 303 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 TINAG-202ENST00000370864 692 ntTSL 2 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AL034397.2-201ENST00000424241 857 ntTSL 2 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 VN1R20P-201ENST00000425215 966 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 SNX18P26-201ENST00000458433 740 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 RN7SL326P-201ENST00000477493 296 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 OR7E22P-201ENST00000478335 1035 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 CR383656.1-201ENST00000484916 377 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 GM2AP2-201ENST00000491764 562 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 RNU6-319P-201ENST00000516025 108 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AP004607.6-201ENST00000525033 1202 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AP000859.1-201ENST00000525536 307 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AC092944.2-201ENST00000605443 889 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 DRG1-207ENST00000629688 309 ntTSL 5 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 NEK2P2-201ENST00000438441 1338 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 OFD1P15Y-201ENST00000411536 1392 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 PPBPP2-201ENST00000513150 1362 ntBASIC8.22□□□□□ -1.09
CHMP4AQ9BY43 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms