Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 LINC00556-201ENST00000569603 412 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AC012146.2-201ENST00000576545 416 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 RFPL4AP6-201ENST00000616792 846 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 FO681491.1-202ENST00000623392 737 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 CUBNP3-201ENST00000457461 1784 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AC020656.2-201ENST00000613291 5309 ntBASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC3Q9BQI4 AC018717.1-201ENST00000457712 1505 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC105235.1-201ENST00000623208 1816 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 SUGT1P2-201ENST00000379452 992 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC005522.1-201ENST00000395416 346 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 RN7SKP121-201ENST00000410842 305 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 SLC20A1P1-201ENST00000413906 956 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC130360.1-201ENST00000425489 1117 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC023141.3-201ENST00000436698 278 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 RNA5SP340-201ENST00000517132 107 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC130365.2-201ENST00000525882 1201 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 MIR3614-201ENST00000581261 86 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AL512652.1-201ENST00000619006 500 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 RAD17P2-201ENST00000451754 1977 ntBASIC6.09□□□□□ -1.43
CCDC3Q9BQI4 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.09□□□□□ -1.44
CCDC3Q9BQI4 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC6.09□□□□□ -1.44
CCDC3Q9BQI4 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AL133243.2-201ENST00000610331 1621 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 RNA5SP478-201ENST00000364657 115 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 RPS7P14-201ENST00000426405 583 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 TPTE2P1-204ENST00000435256 593 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 HNRNPDLP2-201ENST00000455248 751 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC023818.1-201ENST00000498379 384 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 TRIM36-IT1-201ENST00000503723 881 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC253576.1-201ENST00000511645 1156 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC060775.1-201ENST00000518241 520 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC073581.1-201ENST00000519036 575 ntBASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC3Q9BQI4 AC084337.1-201ENST00000524809 686 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms