Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AP000866.6-201ENST00000638898 3579 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 CASC19-255ENST00000641733 1385 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AL591848.4-201ENST00000567832 3472 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 RNA5SP346-201ENST00000363541 121 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 SUGT1P2-201ENST00000379452 992 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 SNORA51.9-201ENST00000384295 124 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 SNORA81-201ENST00000408493 178 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 NPM1P48-201ENST00000436002 853 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AL590004.3-202ENST00000445883 451 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 HLA-DPA3-207ENST00000454398 229 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 RN7SL326P-201ENST00000477493 296 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 OR7E99P-201ENST00000505750 922 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 NPM1P21-201ENST00000513394 762 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC007346.1-201ENST00000569208 867 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC127024.6-201ENST00000621598 424 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC129915.3-201ENST00000634128 948 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 CUBNP3-201ENST00000457461 1784 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 AC005332.9-201ENST00000620266 2921 ntBASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
HDDC3Q8N4P3 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AC011455.2-201ENST00000599320 3336 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 OR7E25P-201ENST00000344844 931 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 LYPLA1P3-201ENST00000402650 695 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AC079355.1-201ENST00000421770 223 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 RN7SL177P-201ENST00000476596 299 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 RNA5SP271-201ENST00000516700 88 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AC022826.1-201ENST00000519383 805 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AC051619.2-201ENST00000559063 397 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 MIR4701-201ENST00000583094 63 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 AC009950.2-201ENST00000636548 183 ntBASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
HDDC3Q8N4P3 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
HDDC3Q8N4P3 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC6.34□□□□□ -1.4
HDDC3Q8N4P3 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.34□□□□□ -1.4
HDDC3Q8N4P3 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.34□□□□□ -1.4
HDDC3Q8N4P3 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.34□□□□□ -1.4
HDDC3Q8N4P3 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms