Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
FOXF1Q12946 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
FOXF1Q12946 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
FOXF1Q12946 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
FOXF1Q12946 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
FOXF1Q12946 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
FOXF1Q12946 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.52□□□□□ -1.53
FOXF1Q12946 AC092646.2-201ENST00000431242 2095 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 USP40-202ENST00000409945 1946 ntTSL 2 BASIC5.52□□□□□ -1.53
FOXF1Q12946 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.52□□□□□ -1.53
FOXF1Q12946 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXF1Q12946 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXF1Q12946 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXF1Q12946 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXF1Q12946 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.52□□□□□ -1.53
FOXF1Q12946 AC119674.1-202ENST00000641333 1860 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
FOXF1Q12946 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
FOXF1Q12946 RNA5SP514-201ENST00000363717 111 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 RNA5SP431-201ENST00000410312 120 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 AL096829.1-201ENST00000413677 457 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXF1Q12946 AC015977.1-201ENST00000418887 292 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 RPS15AP30-201ENST00000420976 390 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC5.52□□□□□ -1.53
FOXF1Q12946 FTLP8-201ENST00000446770 267 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 AL451063.1-201ENST00000450164 1133 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 AC019084.1-201ENST00000457337 432 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXF1Q12946 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXF1Q12946 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.52□□□□□ -1.53
FOXF1Q12946 RN7SL649P-201ENST00000496974 275 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.52□□□□□ -1.53
FOXF1Q12946 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.52□□□□□ -1.53
FOXF1Q12946 AC011853.1-201ENST00000518911 454 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.52□□□□□ -1.53
FOXF1Q12946 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXF1Q12946 AL845552.1-201ENST00000556820 323 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 AC007494.1-201ENST00000562293 760 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.52□□□□□ -1.53
FOXF1Q12946 MIR132-201ENST00000591554 101 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.52□□□□□ -1.53
FOXF1Q12946 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXF1Q12946 AC073592.6-201ENST00000624271 415 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXF1Q12946 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXF1Q12946 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
FOXF1Q12946 MTCO1P28-201ENST00000574177 1528 ntBASIC5.52□□□□□ -1.53
FOXF1Q12946 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXF1Q12946 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXF1Q12946 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
FOXF1Q12946 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXF1Q12946 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXF1Q12946 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.51□□□□□ -1.53
FOXF1Q12946 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
FOXF1Q12946 AC068769.1-201ENST00000474767 2426 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 RN7SKP187-201ENST00000365536 330 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 SNORA51.9-201ENST00000384295 124 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 RNA5SP251-201ENST00000410614 137 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXF1Q12946 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXF1Q12946 AC016027.5-201ENST00000427227 210 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXF1Q12946 AL353662.1-201ENST00000439099 327 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 AC097463.1-201ENST00000447288 481 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 AC016027.4-201ENST00000450866 277 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
FOXF1Q12946 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 RN7SL352P-201ENST00000466002 277 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 RNA5SP473-201ENST00000516402 125 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXF1Q12946 AC009879.1-201ENST00000520029 839 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.51□□□□□ -1.53
FOXF1Q12946 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.51□□□□□ -1.53
FOXF1Q12946 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 AC002310.3-201ENST00000569728 723 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 AC091167.5-201ENST00000605689 894 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 AL645933.2-201ENST00000606743 1207 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 MIR7109-201ENST00000613748 65 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 AP001052.1-201ENST00000626421 99 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 TEX41-271ENST00000628213 993 ntTSL 5 BASIC5.51□□□□□ -1.53
FOXF1Q12946 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
FOXF1Q12946 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXF1Q12946 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXF1Q12946 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 IMMTP1-201ENST00000435590 2219 ntBASIC5.51□□□□□ -1.53
FOXF1Q12946 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXF1Q12946 AC008627.1-201ENST00000517511 1704 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms