Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CDX1P47902 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CDX1P47902 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC5.28□□□□□ -1.56
CDX1P47902 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CDX1P47902 RPEP4-201ENST00000437636 602 ntBASIC5.28□□□□□ -1.56
CDX1P47902 AC064862.5-201ENST00000440618 334 ntBASIC5.28□□□□□ -1.56
CDX1P47902 PA2G4P1-201ENST00000442248 1197 ntBASIC5.28□□□□□ -1.56
CDX1P47902 AC016908.1-201ENST00000442571 1219 ntBASIC5.28□□□□□ -1.56
CDX1P47902 HBG2-204ENST00000444587 307 ntTSL 2 BASIC5.28□□□□□ -1.56
CDX1P47902 VNN3-210ENST00000450865 596 ntTSL 4 BASIC5.28□□□□□ -1.56
CDX1P47902 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC5.28□□□□□ -1.56
CDX1P47902 RN7SL393P-201ENST00000463588 296 ntBASIC5.28□□□□□ -1.56
CDX1P47902 AC083806.1-201ENST00000468934 316 ntBASIC5.28□□□□□ -1.56
CDX1P47902 AC114728.1-201ENST00000488289 483 ntBASIC5.28□□□□□ -1.56
CDX1P47902 NPM1P28-201ENST00000492269 840 ntBASIC5.28□□□□□ -1.56
CDX1P47902 RN7SL187P-201ENST00000495587 303 ntBASIC5.28□□□□□ -1.56
CDX1P47902 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CDX1P47902 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.28□□□□□ -1.56
CDX1P47902 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC5.28□□□□□ -1.56
CDX1P47902 RN7SKP196-201ENST00000516267 345 ntBASIC5.28□□□□□ -1.56
CDX1P47902 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CDX1P47902 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC5.28□□□□□ -1.56
CDX1P47902 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC5.28□□□□□ -1.56
CDX1P47902 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC5.28□□□□□ -1.56
CDX1P47902 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
CDX1P47902 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.28□□□□□ -1.56
CDX1P47902 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.28□□□□□ -1.56
CDX1P47902 OR4C49P-201ENST00000563891 900 ntBASIC5.28□□□□□ -1.56
CDX1P47902 RN7SL66P-201ENST00000582099 264 ntBASIC5.28□□□□□ -1.56
CDX1P47902 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC5.28□□□□□ -1.56
CDX1P47902 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.28□□□□□ -1.56
CDX1P47902 AC012213.4-201ENST00000606457 354 ntBASIC5.28□□□□□ -1.56
CDX1P47902 OR51C1P-201ENST00000608504 942 ntBASIC5.28□□□□□ -1.56
CDX1P47902 AC015922.4-201ENST00000612568 690 ntBASIC5.28□□□□□ -1.56
CDX1P47902 HTR1DP1-201ENST00000616500 888 ntBASIC5.28□□□□□ -1.56
CDX1P47902 MIR7854-201ENST00000620068 65 ntBASIC5.28□□□□□ -1.56
CDX1P47902 AC025262.3-201ENST00000623666 360 ntBASIC5.28□□□□□ -1.56
CDX1P47902 AC119674.1-220ENST00000641502 1048 ntBASIC5.28□□□□□ -1.56
CDX1P47902 ZNF806-201ENST00000438300 1774 ntBASIC5.28□□□□□ -1.56
CDX1P47902 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
CDX1P47902 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
CDX1P47902 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CDX1P47902 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CDX1P47902 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC5.28□□□□□ -1.56
CDX1P47902 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CDX1P47902 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC5.27□□□□□ -1.57
CDX1P47902 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CDX1P47902 AC006213.6-201ENST00000623722 4179 ntBASIC5.27□□□□□ -1.57
CDX1P47902 AP001284.1-201ENST00000528393 2118 ntBASIC5.27□□□□□ -1.57
CDX1P47902 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.27□□□□□ -1.57
CDX1P47902 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
CDX1P47902 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CDX1P47902 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CDX1P47902 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC5.27□□□□□ -1.57
CDX1P47902 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
CDX1P47902 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.27□□□□□ -1.57
CDX1P47902 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.27□□□□□ -1.57
CDX1P47902 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.27□□□□□ -1.57
CDX1P47902 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CDX1P47902 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CDX1P47902 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
CDX1P47902 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CDX1P47902 AL356317.1-201ENST00000396110 1436 ntBASIC5.27□□□□□ -1.57
CDX1P47902 RPL23AP17-201ENST00000401064 499 ntBASIC5.27□□□□□ -1.57
CDX1P47902 RNA5SP155-201ENST00000411154 129 ntBASIC5.27□□□□□ -1.57
CDX1P47902 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.27□□□□□ -1.57
CDX1P47902 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC5.27□□□□□ -1.57
CDX1P47902 Z82198.3-201ENST00000421145 199 ntBASIC5.27□□□□□ -1.57
CDX1P47902 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CDX1P47902 VTI1BP4-201ENST00000427516 527 ntBASIC5.27□□□□□ -1.57
CDX1P47902 AL596268.1-201ENST00000427910 1048 ntBASIC5.27□□□□□ -1.57
CDX1P47902 PAICSP2-201ENST00000429118 1150 ntBASIC5.27□□□□□ -1.57
CDX1P47902 VN1R53P-201ENST00000429536 957 ntBASIC5.27□□□□□ -1.57
CDX1P47902 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC5.27□□□□□ -1.57
CDX1P47902 AL606490.8-201ENST00000441624 319 ntBASIC5.27□□□□□ -1.57
CDX1P47902 AL161722.1-201ENST00000446972 1032 ntBASIC5.27□□□□□ -1.57
CDX1P47902 AL121578.2-201ENST00000448797 447 ntBASIC5.27□□□□□ -1.57
CDX1P47902 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC5.27□□□□□ -1.57
CDX1P47902 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC5.27□□□□□ -1.57
CDX1P47902 RN7SL83P-201ENST00000468131 297 ntBASIC5.27□□□□□ -1.57
CDX1P47902 RN7SL70P-201ENST00000478322 302 ntBASIC5.27□□□□□ -1.57
CDX1P47902 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC5.27□□□□□ -1.57
CDX1P47902 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC5.27□□□□□ -1.57
CDX1P47902 OR4V1P-201ENST00000525394 1140 ntBASIC5.27□□□□□ -1.57
CDX1P47902 SNRPCP6-201ENST00000528310 210 ntBASIC5.27□□□□□ -1.57
CDX1P47902 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC5.27□□□□□ -1.57
CDX1P47902 AP006587.5-201ENST00000532033 739 ntBASIC5.27□□□□□ -1.57
CDX1P47902 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CDX1P47902 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CDX1P47902 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.27□□□□□ -1.57
CDX1P47902 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
CDX1P47902 RN7SL199P-201ENST00000578752 281 ntBASIC5.27□□□□□ -1.57
CDX1P47902 RN7SL656P-201ENST00000579044 281 ntBASIC5.27□□□□□ -1.57
CDX1P47902 MIR4433B-201ENST00000581329 102 ntBASIC5.27□□□□□ -1.57
CDX1P47902 RN7SL404P-201ENST00000582421 281 ntBASIC5.27□□□□□ -1.57
CDX1P47902 HNRNPA3P9-201ENST00000604913 979 ntBASIC5.27□□□□□ -1.57
CDX1P47902 AL035410.2-201ENST00000604963 864 ntBASIC5.27□□□□□ -1.57
CDX1P47902 KATNBL1P1-201ENST00000605192 748 ntBASIC5.27□□□□□ -1.57
CDX1P47902 AC073111.2-201ENST00000605657 1075 ntBASIC5.27□□□□□ -1.57
CDX1P47902 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms